Pseudomonas chlororaphis subsp. aurantiaca: JM49_17355
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Entry
JM49_17355 CDS
T03338
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcp03016
]
JM49_17355
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
JM49_17355
Transfer RNA biogenesis [BR:
pcp03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
JM49_17355
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AIS13350
LinkDB
All DBs
Position
complement(3820329..3820874)
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AA seq
181 aa
AA seq
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MNDESREQGEPFKRLFFALPCTAAQRRAIAQWRGALGLRNGRPVAAENFHLTLMFLGSVA
VAQIPRICAAAASVRTCGEPLDVPLDRLEVWRRAGVLLLAPTQAPLELRQLVYALQEALL
PLGLVDSPREFRPHLTLMRDYRAPVPESQTPPDFHLSARHFALFESHKGRYRPLAEWALA
R
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgagtcccgcgagcagggcgagccgttcaagcggctgttcttcgccttgcct
tgcaccgccgcccaacgccgggccatcgcccagtggcgcggcgcgctggggctcaggaac
ggtcggccggtggcggcggaaaactttcatttgaccctgatgttcctgggctcggtcgcg
gtggcgcagattccgcggatctgcgccgcggcggcgagcgtgcgcacctgcggtgagccg
ctggacgtcccgctcgaccgcctggaggtctggcgccgggccggggtcttgttgctggcg
ccgacacaggcgccgctggagttgcgtcagctggtgtatgccttgcaggaagcgctgctg
ccactggggctggtcgattcgccgcgggagtttcgtccgcacttgaccttgatgcgcgac
tatcgggcgccggtgcccgagtcccagaccccgccggattttcacctgagtgcccggcac
ttcgccctgttcgagtcgcataaaggccgttatcggccgctggccgaatgggcgctggcg
cggtga
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