Pseudomonas chlororaphis subsp. aurantiaca: JM49_19275
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Entry
JM49_19275 CDS
T03338
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcp03016
]
JM49_19275
Enzymes [BR:
pcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JM49_19275
Transfer RNA biogenesis [BR:
pcp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JM49_19275
Prokaryotic type
tRNA splicing ligases
JM49_19275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
KH_NucS_shadow
TFX_C
Motif
Other DBs
NCBI-ProteinID:
AIS13715
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All DBs
Position
complement(4221012..4222238)
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AA seq
408 aa
AA seq
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MEHKTYQLLEVANGKPIKMWTEGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTLGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRSAIEQAVPHGRTSPRS
GRDKGAWGDVPRQADHAWAALQPRFKAITDKYPALANSNNRQHLGTLGGGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIHLAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAV
AWAQDFARHNRELMMQLVIQATRQVIRKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAQKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTLADQIRA
TAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaagacctaccaactgctggaagtcgccaacggcaagccgatcaagatgtgg
accgagggcgtgccggtggaaaacgaagcccgccagcagttgatgaacacggcgaagatg
ccgttcatcttcaagcacctggcggtgatgccggatgtgcacctgggcaagggctcgacc
attggcagcgtgatccccaccctgggcgcgatcatcccggcggcggtcggggtggatatc
ggctgcggcatgatcgccgcccgtacctcgctgaccgctgccgacctgccggataacctg
cacggtttgcgcagcgccatcgaacaggcggtaccccacggtcgtacctcgccgcgcagc
ggtcgcgacaagggtgcctggggcgacgtgccgcgccaggccgaccacgcctgggcggcc
ttgcagccacgcttcaaggcgatcaccgacaagtacccggcgctggccaacagcaacaac
cgccagcacctgggtaccctcggcggcggcaaccacttcatcgaggtctgcctggatgaa
gccaaccgggtctggttcatgctccacagcggttcccgtggcgtgggtaacgccatcggc
aacctgttcatccacctggcccaggcggacatgcgccagcacatcgccaacctgccggac
cgcgacctggcctacttcgaggaaggcagccggcacttcgacgattacgtcgaggccgtg
gcctgggcacaggactttgcccggcataaccgtgaattgatgatgcaactggtgatccag
gccacccgccaggtgatccgcaagcctttcgaggtggcactggaggcggtgaactgccac
cacaactatgtgcagaaggagcgccacttcggtgaagaggtgctggtgacccgcaagggc
gcggtgtcggcgcagaagggcgagctggggatcatccccggatcgatgggcgccaagagc
ttcatcgttcgcgggctgggcaacgaggaggcgttctgctcctgcagccacggtgccggg
cgcaccatgagccgcaccaaggccaagaacaccttcaccctggccgaccagatccgcgcc
accgcccatgtggagtgccgcaaggacgaagcggtaatcgatgaaatcccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgcgagctggtggaagtgctgcacaccctg
cgtcaggtggtgtgcgtcaaggggtag
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