Pseudomonas chlororaphis subsp. aurantiaca: JM49_19285
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Entry
JM49_19285 CDS
T03338
Name
(GenBank) transcriptional regulator
KO
K14414
transcriptional regulatory protein RtcR
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcp03000
]
JM49_19285
Transcription factors [BR:
pcp03000
]
Prokaryotic type
Other transcription factors
Others
JM49_19285
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GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_22
AAA_16
NACHT
ABC_tran
AAA_30
MCM
AAA_19
ATPase_2
AAA_7
BrxC_BrxD
AAA_2
AAA_14
TniB
AAA_33
IstB_IS21
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AIS13717
LinkDB
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Position
4224688..4226295
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AA seq
535 aa
AA seq
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MSGKPTVAIGFVGSTLDRVGKGANRWSHWRPSVGLCQQQDVLINRLELIHGVDARDVSLA
ERVANDIRQVSPETEVRLHPMGLKNPWDFEEVYGALHDFTSAYPFDTEREDYLVHITTGT
HVAQICWFLLTEARYLPARLIQTSPARRRDPEQHATGTHALIDLDLSRYDRIASRFAGKR
LEGLAFLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLIGPTGAGKSFLARRIYELKRGR
HQVQGRFVEVNCATLRGDGAMSALFGHIKGAFTGAQNARDGLLRAADGGMLFLDEIGELG
LDEQAMLLKAIEEKRFFPMGSDKEVDSDFLIIAGTHRDLRGRVAQGLFREDLYARINLWT
FNLPGLAGRREDIEPNIDFELERHAREQGRLVRFNLEARRRYLAFACSSEAAWLGNFREL
SASITRMATLADSGRIDEAQAEEEIERLRYAWGLSQEQDPLATLLGDTAELDLFDRLQLQ
AVLEVCRQADSLSDAGRKLFGVSRQTKAQPNDADRLRKYLARFGLEWKQIVAPAD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcaagcccacggtcgccataggttttgtcggttccaccctcgatcgcgtcggc
aagggcgccaaccgctggagccactggcgccccagtgtcggcctgtgccaacagcaggac
gtgctgatcaatcgcctggaactgatccacggtgtcgacgcccgggacgtcagcctggcc
gagcgggtggccaacgacattcgccaggtgtcgccggaaaccgaggtgcgcctgcacccc
atgggcctgaagaacccctgggatttcgaagaggtgtacggcgccctgcacgacttcacc
agcgcctaccccttcgacaccgagcgcgaggactacctggtgcacatcaccaccgggacc
cacgtggcgcagatctgctggttcctgctgaccgaggcgcgctacctgccggcgcggctg
atccagacctccccggcgcggcgtcgcgacccggagcagcacgccaccggcacccacgcc
ctgatcgacctcgacctgtcgcgctacgaccgcatcgcctcgcgcttcgccggcaagcgc
ctggagggcctggccttcctcaagtccgggatcgccacccgcaacgccgcgttcaaccgt
tccatcgaacagatcgagcgtgttgctgtgcgctccagggcaccgatgctgctgatcggc
cccaccggtgccggcaagtcgttcctggcccggcgcatctatgaactcaagcgcggccgg
caccaggtccaggggcgttttgtcgaggtcaactgcgccaccctgcgcggcgacggcgcc
atgtcggcgctgttcgggcatatcaagggcgccttcaccggcgcccagaacgcccgcgac
ggcctgctgcgggcggcggacggcggcatgctgtttctcgacgagattggcgagctgggg
ctcgacgaacaggcgatgctgctcaaggccatcgaggaaaaacgcttcttccccatgggc
tcggacaaggaagtggacagcgacttcctgatcatcgccggcacccaccgcgacctgcgc
ggccgggtcgcccagggcctgttccgcgaggacctgtatgcgcggatcaacctctggacc
ttcaacctgccggggctcgccgggcggcgtgaggacatcgagccgaacatcgatttcgaa
ctggaacgccacgcccgggaacaagggcgcctggtgcgcttcaacctcgaggcacggcgg
cgctacctggcgtttgcctgctccagcgaggcggcgtggctgggcaacttccgcgagttg
tcggcgtccatcacccgcatggccaccctggccgacagcgggcgcatcgacgaagcccaa
gccgaggaagaaatcgagcggctacgttatgcctggggcttgagccaggagcaggatccg
ttggccactttgctgggcgacacagccgaactcgacctgttcgaccgcttgcaattgcag
gcagtgctcgaggtctgccgccaggccgacagcctgtccgatgccgggcgcaagctgttt
ggcgtgtcccgccagaccaaggcccagcccaatgacgccgaccgcctgcgcaagtacctg
gcgcgcttcggcctggagtggaagcagatagttgcaccagcggactaa
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