Pseudomonas chlororaphis subsp. aurantiaca: JM49_22650
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Entry
JM49_22650 CDS
T03338
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcp03009
]
JM49_22650
Enzymes [BR:
pcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JM49_22650
Ribosome biogenesis [BR:
pcp03009
]
Prokaryotic type
rRNA helicases
JM49_22650
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
AIS14353
LinkDB
All DBs
Position
complement(4964504..4965841)
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AA seq
445 aa
AA seq
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MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTM
LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQNFERRTIKEVKGTYGGPKKVKASGKAAGVKKKKTDAKGDKKKAAAKAPTKRKTANR
PKSDALVSQDGMAPLKRRKPAPAAE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccaacgcctgtgcaggcagcggccattccgctcgcgctccaggggcgtgacctg
cgggtgacggcgcagaccggcagcggcaagaccgccgcgttcgtcctgccgatcctcaat
cgcctgatcggcccggcgaagatccgcgtcagcatcaagaccctgatcctgctgccgacc
cgcgaactggcgcagcagaccctgaaggaagtcgaacgcttctcgcagttcaccttcatc
aaggctggcctgatcaccggcggcgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggacatcctgatcggcaccccgggtcgcctgatcgagcaactgaacgccggcaac
ctcgatttgaaagaagtggaagtgctggtcctcgacgaagccgaccgcatgctcgacatg
ggctttgccgacgacgtgcagcgcctggtggacgagtgcccgaaccgccagcagaccatg
ctgttttccgccaccactggtggctcgggcctgcgcgagatggtcgccaaggtcctgaac
aaccctgagcacctgcagctcaacgcggtcagccagctgaacgacaccacccgccagcag
atcatcaccgccgaccacaaccagcacaaagagcagatcgtcaactggctgctggccaac
gagacctaccagaaggccatcgtcttcaccaacacccgcgccatggccgaccgcatctac
ggccgcctggtggcccaggagtacaaggcgttcgtcctgcacggtgagaaagaccagaag
gaccgcaagctggccatcgaccgcctgaagcagggcggggtgaaaatcctcgtcgccacc
gacgtcgccgcccgcggcctggacgtcgacggcctggacctggtgatcaacttcgacatg
ccacgcagcggcgacgaatacgtgcaccgcatcggccgtaccggccgcgccggcaacgac
ggcctggccatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgaacgc
tacctcaagcagaacttcgagcgccgtaccatcaaggaagtcaaaggcacctacggcggg
ccgaagaaggtcaaggcctccggcaaggccgcgggcgtgaagaagaaaaagaccgacgcc
aagggcgacaagaaaaaagccgcggccaaggccccgaccaaacgcaagaccgccaaccgg
ccgaaaagcgatgccctggtcagccaggacggcatggcgccgctcaagcgccgcaagcca
gcaccggctgccgaataa
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