Pseudomonas chlororaphis subsp. aurantiaca: JM49_22780
Help
Entry
JM49_22780 CDS
T03338
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcp03019
]
JM49_22780
Enzymes [BR:
pcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JM49_22780
Messenger RNA biogenesis [BR:
pcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JM49_22780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
T2SSE
NACHT
ABC_tran
ResIII
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AIS14378
LinkDB
All DBs
Position
complement(4993915..4997808)
Genome browser
AA seq
1297 aa
AA seq
DB search
MTDQLLKNLDQAMLADRHRLRRQLLELRKKPDEAKLGQWVERMQASCAQVAARRASVPSI
RYDDSLPIAAKRDEIKAALQKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPR
RIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQNDRYLERY
DTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSG
RTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAHERSERRSPGDVLVFLPG
EREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVPG
IRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFNG
RPEFTAPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELSAVDRNS
QLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQAADQA
HAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSHRQLSLI
CRDLQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEEGDYLGARQRRFWVHPSSGLGKKRP
QWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQITLF
GLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSKAKCLSANTRLLEQLDELEAKARR
RDILADEETLFAFYDARLPAEIHQTATFDSWYRVHSQKDPQLLIMREEDVLAREASEVTA
MQYPDTLQIGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGLVEAKCIA
LVRNLPKALRKNFVPVPDFVKAALARIDFAQGSLPQALGRELLRMTGARVSDEAWAESAQ
QVESHLRMNLEIVDAQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVEAKVFAA
VAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLLQQLAEPAKF
LRNKLPGLTELGLLYRELGRVDALVEDILLASLDSCVLDGEDSLPRDGAGLASLAERKRG
SWTEHAERLARLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKSQLSHLVYPGFVRETPA
QWLKELPRYLKAVELRFEKLGSQVQKDRVWSTELAGLWNQYQVRAGKHAQEGKRDPQLEL
YRWWLEEYRVSLFAQQLGTKAPISDKRLNKQWSQVEA
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccaactgctgaaaaacctcgaccaagccatgctcgccgaccgccaccggttg
cgccggcagctgcttgaactgcgcaagaaacccgacgaggccaagcttgggcagtgggtc
gaacgcatgcaggcgtcctgcgcccaggtggcggcgcggcgcgccagcgtgccgtcgatt
cgctacgacgacagcctgccgatcgccgccaagcgcgacgagatcaaggcggcgctgcaa
aagcatcaagtgctgatcatcgccggcgaaaccggctcgggtaaaaccacccagttgccg
aagatctgcctggaaatcggtcgcggccagcacggcctgatcggtcatacccagcctcgg
cggatcgccgcgcgcagcgtggccagccgggtcgccgaagagctggcgacgccgctaggt
gccctggtgggttaccaggtgcgcttcgaggaccagagcgattcgaacaccctgatcaag
ctgatgaccgacggcatcctgctggcggaaacccagaacgaccgctacctggaacgctac
gacaccatcatcgtcgacgaagcccacgagcgcagcctgaacatcgacttcctgctgggc
tacctgaagaccctgctgccgcggcgtccggacctcaaggtcatcatcacctcggcgacc
atcgacctggaacgcttctccaagcatttcgacgacgcgccgatcgtcgaggtctccggt
cgcaccttcccggtggagacctggtaccgcccgctgaccctggagcaggacgaagagggc
aaccgggtcgaggacgacctgacggtggaccaggcgatcctcgccaccctcgacgaaatc
gccgcccatgagcgcagcgaacgccgcagcccgggtgatgtgctggtgttcctgccgggc
gagcgagagattcgcgacgccgccgaaatgctgcgcaaggcccagctcaagcacaccgaa
atcctgccgctgtatgcgcgcctgtcgccggccgagcagcagcggattttccagtcgcac
ccgggccgcagggtggtactggcgaccaacgtcgccgagacctcgctgaccgtgccgggt
atccgctacgtgatcgacagcggcaccgcgcgcatcagccgctacagctaccgggccaag
gtccagcgcctgcccatcgaggcgatttcccaggccagcgccaaccagcgtaaaggccgc
tgcggccgggtcgagccgggcatctgcgtgcgcctgtacagcgaagaggatttcaacggc
cgtccggagttcaccgccccggagatcctgcgcaccaacctggcggcggtgatcctgcag
atgctccatctgcgcctcggtgaaatcactgcgttcccttttatcgagccgccagatggc
aaggccatcagcgacggtttcaacctgctgcaagaactctcggcggtggaccgcaacagc
cagctgacgccgctgggccgccaattggcgcggttgccggtggacccgcgcatgggccgc
atgctgctggaagcggcgaagctgggcagcctgcaggaagtgctgatcgtcgccagcgcc
atgtcgatccaggacccgcgcgagcgaccgccggagcgccagcaggcggccgaccaggcc
cacgcgcagtggaaggacgccgactcggatttcgccgggctggtcaatctgtggcgcggt
ttcgaagagcagcgccaggcgctgaccgccagcccgctgcgtaactggtgccgcaagaat
ttcctcaactacctgcgcctgcgcgagtggcgcgactcccatcgccagctgagcctgatc
tgccgcgacctgcaactgagcctgaacaaggaaccggccgactatccgaaactgcacaag
gcggtactggtcggcctgctgagccagatcggccagaagaccgaggagggcgactacctc
ggtgcccgtcagcggcgcttctgggtgcatccatcgtcggggctgggcaagaagcgtccg
cagtggctgatgaccgccgagctggtggaaaccaccaagctctatgcgcgcatggtggcg
aagatcgagccggactggatcgagccgctggccgggcacctgatcaagaagaaccacttc
gaaccgcattgggagaagaagcgcgggcaggtggtggcctacgagcagatcaccctgttc
ggcctgatcgtggtcggccgccgcccggtgcattacggcccggtggacccggtggtgtcg
cgcgagctgtttatccgcgaaggcctggtgcgtggcgagatccagtcgaaagccaagtgc
ctgagtgccaacacgcgcttgctggagcagctcgacgaactggaagccaaggcccggcgc
cgcgacatcctcgccgacgaggagaccctgttcgccttctacgacgcacgcctgccggcc
gagatccaccagaccgcgaccttcgacagctggtaccgggtgcacagccagaaagacccg
cagctgctgatcatgcgcgaggaggatgtgctggcccgcgaggccagcgaagtcaccgcc
atgcagtacccggacaccctgcagatcggcgacctggaactggccctgagttatcacttc
gagcctaaccacccacgggacggcgtcaccctgcgggtgccggcgccgctgctgccggcc
ttgcccgccgagcgcctggaatggctggtgccggggctggtggaagccaagtgcatcgcc
ctggtgcgcaacctgcccaaggcgctgcgcaagaacttcgtgccggtgccggacttcgtc
aaggcggccctggcgcgtatcgactttgcccagggctcgctgccccaggcgctgggtcgc
gagctgctgcgcatgaccggggcgcgggtcagcgacgaggcctgggccgagtcggcgcaa
caggtggaaagccacctgcggatgaacctggaaatcgtcgacgcccagggcaagttcctc
ggcgaaggccgcgacctggctgagctgaccgcgcgtttcgccgaggccagccaggccgcc
ctggccgtgccgcaaaccgcgaaaagccagcagccggtagaggccaaggtgttcgccgcg
gtggcggaaaagacccagcagaagatcgccgggctgtcgatgacggtgtatccggcgctg
gtagaagaggggggcacggttaaggaggggcgtttctccactccggccgaggccgagttc
cagcatcgccgtgccttgcagcgcctgttgctgcaacagctggccgagccggccaagttc
ctgcgcaacaagctgccggggctgaccgagctgggcctgctgtatcgcgaactggggcgc
gtcgacgccctggtggaagacatcctgctggccagcctcgacagctgcgtgctggacggc
gaggacagcctgccccgggatggcgccggcctggcgtcgctggccgagcgcaagcgcggc
agctggaccgagcacgccgaacgcctggcgcgcctgaccctggatatcctcaagctctgg
cacggcctgcaaaagcgcttcaagggcaagatcgacctggcccaggcggtggcgctgaac
gacatcaagtcgcagctaagccatctggtgtacccgggttttgtccgcgagaccccggcg
caatggctcaaggagctgccacgttacctcaaggccgtcgagctgcgtttcgagaaactc
ggcagccaggtgcagaaggaccgggtctggagtaccgaactggccggcctgtggaaccag
taccaggtccgcgccggcaaacatgcccaggaaggcaagcgcgacccgcaactggagctg
taccgctggtggctggaggaataccgggtgtcgctgttcgcccagcaactgggcaccaag
gcgccgatttccgacaagcgcctgaacaagcagtggagccaggtggaagcctga
DBGET
integrated database retrieval system
