Pseudomonas chlororaphis subsp. aurantiaca: JM49_22935
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Entry
JM49_22935 CDS
T03338
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcp03016
]
JM49_22935
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JM49_22935
Transfer RNA biogenesis [BR:
pcp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JM49_22935
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AIS14409
LinkDB
All DBs
Position
complement(5029914..5031047)
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGQFCTEWQKLPFVALDTEFMRVDTFYPIAGLLQVGDGQRAYLIDPL
TIDDWQPLAALLENSAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEAFTQLRPKLSEDKYNWV
LEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIV
REHSLWPLAKSQPDSLGALAKIEDMHPRTVRQDGEFLLGLIKRAASVSPDQWPPVVPEPL
PMEASHLLKRLRAVGQAEAERLGIAPELMLRKKTLESLLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcaattctgcaccgag
tggcagaagctgccattcgtcgccctcgacaccgaattcatgcgggtcgacaccttctat
ccgatcgccggcctgttgcaggtcggcgatggccagcgcgcttacctcatcgaccccttg
accatcgacgactggcagccgctggcggccttgctggagaacagcgcggtggtcaaggtg
gtgcacgcctgcagcgaggacctcgaagtcctgctgcgcctgaccggcagcctgccggcg
ccgttgttcgacacacaactggcggccgcctacctgaacctgggcttctccatgggttac
tcgcgactggtccaggaagtgctgggcatcgagttgcccaagggcgagacccgctccgac
tggctgcagcgtccgctctcggaaacccaggtcagctacgccgccgaagacgccgtgcac
ctggccgaggccttcacccagctgcggccgaaactgtccgaggacaaatacaactgggtg
ctggaagacggcgccgagctggtggccaacctgcgccgcgaagtcgatccctatgaggtc
taccgcgaggccaagctggcctggaaactgtcccgcgcgcagctggcagtcctgcgtgaa
ctctgcgcctggcgcgagcgcgaggcccgggcgcgggacctgccgcgcaaccggatcgtg
cgcgagcactcgctgtggccgttggccaagagccagccggacagcctcggcgccctggcg
aaaatcgaagacatgcacccgcgcaccgtgcgtcaggacggcgagtttctgctgggcctg
atcaagcgtgccgccagcgtcagccccgaccagtggccgccggtcgtccccgagccgttg
ccgatggaagcctcgcacctgctcaagcgcctgcgcgccgtgggccaggccgaagccgag
cgcctgggcatcgccccggagctgatgctgcgcaagaaaaccctggaaagcctgctcaag
agcggcttccccaacggaccctaccaattgcccgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctcgacagcctggccaccgccggagaacagccatga
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