Pseudomonas chlororaphis subsp. aurantiaca: JM49_23650
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Entry
JM49_23650 CDS
T03338
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcp03021
]
JM49_23650
Transcription machinery [BR:
pcp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
JM49_23650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIS14542
LinkDB
All DBs
Position
5185006..5187852
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AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DTITHFEGWKMTVREVDDVDGLLVYHGLNGQNEVVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
ANPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPEYALVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDK
GRLSPEAHKTIHNFLGNEGEALLAAVNEGDSEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSP
QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGEWQALIDEARTERERLE
AELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSDNAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSARVAF
ETLNDQLESVPRASANKFIQAQRDQLTPKINAGEAKIAPRHAERVAEAQRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagccgagctaggt
ctaggcaccgttctggcacaggacggccgcttgctgaccgtgctctatccggccactggc
gacactcgccagtatgcgctacggaatgcgcccctcactcgcgtgaggttttccccgggt
gacaccatcacccacttcgaaggctggaagatgaccgtgcgcgaagtcgacgacgtcgat
ggcctgctggtctaccacggcctcaacgggcagaacgaagtcgtcaccctgccggaaacc
caactctcgaacttcatccagttccgtctggccagcgaccgtctgttcgccgggcagatc
gacccgctggcctggttctccctgcgctaccacaccctggaacacaccagccgccagctg
cagtcgtcgctatggggcctgggtggcgtacgcgcccagccgatcgcccaccaactgcac
attgcccgtgaagtcgccgaccgtatcgcgccgcgggttctgctggcggacgaagtgggc
ctgggcaagaccatcgaagccggcctggtgatccatcgccagctgctgtcgggccgcgcc
agccgcgtgctgatcctggtcccggagaaccttcagcaccagtggctggtggaaatgcgc
cggcgcttcaacctgcaggtcgcgctgttcgacgaagaacgttttatcgaaagcgatgcc
gccaaccccttcgaggacacccagctcgccctggtggccctggaatggctggtggacgac
gagaaggcccaggacgcgctgttcgccgccggctgggacctgatggtggtcgacgaagcc
caccacctggtgtggcacgaagaccaggtcagcccggaatacgcgctggtggaacagctg
gccgaggtgatccccggcgtcctgctgctcaccgccaccccggagcaactgggccaggac
agccacttcgcccgtctgcgcctgctcgacccgaaccgtttccacgacctggccgccttc
cgcgccgagagcgaaaactatcgcccggtggccgaagccgtgcaggagctgctggataaa
ggacgcctgtcgcccgaagcgcacaagaccatccacaacttcctcggcaacgaaggcgaa
gccctgctcgccgccgtcaacgagggtgacagcgaggccagcgcgcgcctggtgcgcgag
ctgctggaccgccacggcaccggccgcgtgctgttccgcaacacccgcgccgcggtgcaa
ggcttccccgagcgcaagctgcacccctacccgctgccatgcccagacgaatacctggaa
ctgccgctgggcgaacacgccgagctgtacccggaagtcagcttccaggcccagccggac
gccagcgaagaagagcgctggtggaaattcgacccgcgtgtcgagtggctgatcgaccag
ctgaaaatgctcaagcgcaccaaggtcctggtgatctgcgcccacgcggaaaccgccatg
gacctggaagacgccctgcgcgtgcgttccggcatcccggccacggtgttccacgaaggc
atgaacatccttgagcgtgaccgcgccgccgcctacttcgccgacgaagagttcggcgcc
caggtgctgatctgctcggaaatcggcagtgaaggtcgcaacttccagttcgcccaccac
ctggtgctgttcgatctgccgtcgcacccggacctgctggagcagcggatcggccgtctc
gaccggatcggccagaaacacgtgatcgaactgcatgtgccgtacctggaaaccagcccg
caagagcgcctgttccagtggtaccacgaagcgctgaacgccttcctcaatacctgcccg
accggcaacgccctgcagcatcagttcggcccgcgcctgctgccgctgctggaagaagcc
gacgacggcgagtggcaagcgctgatcgacgaggcgcgcaccgagcgcgaacgccttgag
gccgagctgcacaccggtcgcgaccgtctgttggagctcaactccggcggcgctggcgaa
ggcgacgcgctggtggaagcgatcctcgagcaggacgatcagttcgccctgccgatctac
atggaaaccctgttcgacgccttcggcatcgacagcgaagaccattcggacaacgcgctg
atcctcaagccgagcgaaaaaatgctcgacgccagcttcccgctgggcgacgacgaaggc
gtgaccatcacctacgaccgcaaccaggcgctgtctcgcgaagacatgcagttcatcacc
tgggaacacccgatggtgcaaggcggcatggacctggtgctgtccggttccatgggcaac
accgccgtggcgctgatcaagaacaaggcgctgaaacccggcaccgtgttgctggaactg
ctgtacgtcagtgaagtggtggcaccgcgctcgctgcagctgggccgctacctgccaccg
gccgccctgcgctgcctgctggacgccaacggcaacgacctgtcggcacgcgtcgccttc
gagaccctcaacgaccagctggaaagcgtgccacgggccagcgccaacaagttcatccag
gcccagcgcgaccagctgacgccgaagatcaacgctggcgaagcgaagattgccccacgt
cacgccgagcgcgtggccgaggcgcaacgtcgcctggccgccgacaccgacgaagaactg
gcacgcctgaccgcgttgcaagcggtcaacccgaccgtgcgcgacagcgagctggtggcc
ctgcgtcaacaacgcgaacaaggcctggccatgcttgaaaaagccgcgctgcgcctggaa
gcgatccgggtactggtagcgggctaa
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