Pseudomonas chlororaphis subsp. aurantiaca: JM49_26080
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Entry
JM49_26080 CDS
T03338
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM49_26080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcp03019
]
JM49_26080
03016 Transfer RNA biogenesis [BR:
pcp03016
]
JM49_26080
Enzymes [BR:
pcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JM49_26080
Messenger RNA biogenesis [BR:
pcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JM49_26080
Transfer RNA biogenesis [BR:
pcp03016
]
Prokaryotic type
tRNA degradation factors
JM49_26080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_N4BP1_2nd
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AIS15019
LinkDB
All DBs
Position
complement(5694365..5696470)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWAPAPEA
TDLLGAIRSEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSAADVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtggttggcgccaagcaagccgatccaggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgtctgatcgaccgtccgatccgc
cctctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggcaatc
tccggcattcctttcgacggtccgatcggcgctgcccgcgttgcgttccacgaaagcacc
ggctacctgctgaacccgacttacgagcagcttcaggcatctagcctggacatggtcgta
gccggtaccgaagaagcggtactgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgttcgcccacgacgaattccaggccgttatccaggccgtc
aaagagctggctgccgaagccgccaagccaacctgggactgggctccagctccagaagcc
accgacctgctgggcgccatccgctccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttatgcacgcctgggcgagctgaaagaccaggtcgtcgcc
aagctgtccggcgaagaaggccagccttccgctgccgacgtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggtcgc
gacacccgcaccgtacgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggcgctgttcacccgtggcgagacccaggctctggtagtcgcgaccctgggtaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggcggcgctggccgtcgt
gaaatcggtcacggccgtctggcccgtcgttcggttcaggccatgctgccagccgctgac
gtgttcccttacaccatccgcgtagtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtttgcggtgcttccctggcgctgatggacgctggtgtgccgatgaaggcg
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaagttcgccgttctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggcgtcaccgcgctgcagatggacatcaaaatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcattggccagtcgcgtaccgagctgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagaaaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagccgcagaagccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctacgtcggtaaggttgagcgtatcgtcgacttcggcgcattcgtc
aacatcctgcctggcaaggacggtctggttcacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgacatcctgaaagaaggtcaggaagtggaagtgctggtactggacgtg
gacaaccgcggtcgtatcaagctgtccatcaaagacgtggcagcagccaaggcttcgggc
gtttaa
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