Pseudomonas chlororaphis subsp. aurantiaca: JM49_26645
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Entry
JM49_26645 CDS
T03338
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JM49_26645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_26645
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JM49_26645
DNA repair and recombination proteins [BR:
pcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JM49_26645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_17
SLFN-g3_helicase
AAA_28
AAA_16
TraI_hel_assoc_N
AAA_5
AAA_25
NTPase_1
T2SSE
nSTAND3
PhoH
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AIS15123
LinkDB
All DBs
Position
complement(5812834..5814909)
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AA seq
691 aa
AA seq
DB search
MIEDLLTPLEPQPQPDLAPLARAADLLLLLDRWVERGWLRALDKAFVGFLHELEPQGDPL
VLMAAALTSHQLGHGHVCLDLFETLKEPDFALSLPPEGDLQSTAAVLPSQVLATLDGAHW
CKALAASRLVALAADQSEQARQRPLVLSGKRLYLRRYWAYERRIDNALRQRLAVQEETPA
DLAERLGGLFGAAKATGPVDWQKLACALATRGAFSIITGGPGTGKTTTVVRLLALLQAPA
VEAGKPLRIRLAAPTGKAAARLTESISLQVRSLSVDDSVREKIPSDVTTVHRLLGNRPGT
RHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPVHARLVLLGDKDQLASVEAGAVL
GDLCRDAEAGWYSPQTRRWLEAVSGEQLADSGLQEDNAGSHPLAQQVVMLRHSRRFGEGS
GIGQLARWVNQQQAEEARRLLAARSHADLYGLSLKGEQDRALERLLLEGHGDGPQGYRHY
LSLLRGQRPPVDTALEDPRWTAWARDVLQAFDQFQLLCAVRKGPWGVEGLNQRITAALFK
ARLIESDQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPEHEGAQDGRRVLRVAFPRNDG
QGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELIYTGITRAKD
WFSLIEPRAGVFEEAVRRKVKRLSGLMLDLG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaggatctgctgacgccgctggaaccccagccccagcccgacctggcgcccctg
gcacgggcagccgatctgctgctgttgctcgatcgttgggtcgagcgcggctggctgcgt
gccctggacaaggctttcgtaggcttcctgcatgagctggagccacaaggcgatccgctg
gtgctgatggccgcggcgttgaccagccatcaactgggtcacggtcatgtctgcctggat
ctgttcgaaaccctcaaggagccggatttcgccctgtccctgccgccggaaggcgatctg
caaagcaccgcggcggtactgccgtcgcaggtgctggcgacgctggacggggcgcactgg
tgcaaggccctggcggccagtcgcctggtagcgttggcggccgaccagagcgagcaggct
cgccagcggcctttggtgttgtcgggcaaacgcctgtatttgcgccgctactgggcctat
gagcggcgcatcgacaatgccttgcgccagcgtctggcggtgcaggaggaaacccccgcg
gatctggccgagcgcctcggcggtctgttcggggcggctaaggcgacggggccggtcgac
tggcagaaactcgcctgtgcgctggccacccgtggcgccttcagcatcattaccggcggg
cccggtaccggtaaaaccacgaccgtggtgcgcctgctggccttgcttcaggcgccggct
gtcgaagccggcaagcctttgcgtatccgcctcgcggcgcccaccggcaaggcggcggcg
cgcctgaccgaatccatcagcctgcaagtgcgttccctgtcagtcgacgacagcgtgcgc
gagaagatccccagcgacgtgaccacggtgcaccggctgctgggcaatcgtccgggtacc
cggcacttccgccatcacgccggcaaccgcttgccgctggatgtgctggtggtcgacgaa
gcctcgatgatcgacctggagatgatggccaacctgctcgatgcgttgccggtgcacgcg
cgcctggtgttgctcggcgacaaggatcaattggcctctgtggaagccggtgcggtgctt
ggcgatctgtgccgcgatgccgaggccggctggtacagcccgcagacccgccgctggctc
gaggccgtcagcggcgaacaattggcggacagcgggctgcaggaagacaacgccggtagt
cacccgctggcccagcaggtggtgatgctgcgccactcccggcgtttcggcgaaggcagc
ggtatcggccagttggcacgctgggtcaaccagcagcaggccgaggaagcgcgccgcctg
ttggccgcccgcagccacgccgacttgtatggcttgagcctcaagggcgagcaggatcgc
gccctggagcgcttgctgctggagggccacggtgacgggccgcagggttaccggcattac
ctgagcctgctgcgcggccagcgcccgcccgtcgataccgcgctggaagatccgcgctgg
accgcctgggcccgcgatgtgctgcaggccttcgaccagttccagttgctctgcgcggtg
cgcaaggggccttggggtgtcgagggcttgaaccagcggatcaccgctgccctgttcaag
gcgcggctgatcgaaagcgatcagcaatggtatgaaggtcgtccggtgctgatgacccgc
aacgattacggcctgggcctgatgaatggcgatatcggcattgccctgaagctgcccgag
cacgaaggcgcgcaggacgggcggcgggtgctgcgggtggccttcccgcgcaatgacggc
cagggtggcgtgcgtttcgtgctgccgagccggctcaacgatgtggaaaccgtgtacgcc
atgactgtacacaaatcccagggctcggaattcgcccacaccgcgctgatcctgcccgag
gcgctgaacccggtgctgaccaaggagctgatctacaccgggatcacccgggccaaggac
tggttcagcctgatcgagccgcgggccggggtgttcgaggaggcggtgcggcgcaaggtc
aagcgcctgagcgggttgatgctcgacctgggttga
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