Pseudomonas chlororaphis subsp. aurantiaca: JM49_26650
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Entry
JM49_26650 CDS
T03338
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JM49_26650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_26650
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JM49_26650
DNA repair and recombination proteins [BR:
pcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JM49_26650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
AAA_11
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIS15124
LinkDB
All DBs
Position
complement(5814906..5818598)
Genome browser
AA seq
1230 aa
AA seq
DB search
MTRQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGELAGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFREETTAPDALIAELRDQFAAEQWPGCASRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGD
ALNWVRANWGGPAALLPRVRALFGSEREVDQEQTPAQLIEACLLERRAALVQLKAPWQQW
AAQLREICLQGVASKAVDGRKMQARYFEPWFEKITAWAEDEAIEQLDIGTGFSRLTPEGM
AEAWKGDAPDHPALEAMVGLKAALDALPSPDAAVLQHAACWVGARFEEEKRRRAEMGFDD
MLLRLDAALQAEGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNNPETGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSHAMVKAVNHVFERAESREQ
GRGAFLFREKSGENPVPFLAVASQGRKEQLQREGQVVPALNIWHLPTEQAISGALYRQQL
AAACASEIVALLNGGQQASVGFARDGQPFKGLLPADIAILVRDGKEAQAVRAELAARGVR
SVYLSDKDSVFAAQEAHDLLAWLKACAEPDIERPLRAALASITLNLPLVELERLNQDELA
WESRVMQFRGYRLIWRTQGVLPMLRRLLHDFQLPQALIARSDGERVLTNLLHLSELLQQA
AAELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPLHYHDESGKAQVTLRPTPELIAQADDERLAEDLRLFYVALTRAQHACW
LGVADLKRGNHNSSVLHLSALGYLLGGGALLNESSGLARWLQDLQQGCEAMSVGEMPSAT
DSRFHPPRNDATLLAPLAPKRRAAENWWIASYSALRISDSLGAGNTEAPESPQAQKLFDD
ERLDPDAPREVVASGADIHRFPRGPNPGTFLHGLLEWAGDEGFAADPAAIEDAIGRRCNR
RGWEGWIRTLSDWLRHLLQLPLPAGAGRPPVVLAQLSQYRVEMEFWFASHKVDVLKLDEL
VRQYTHQGVPRVTAEPVLLNGMFKGFIDLTFEHEGRYYVADYKSNWLGVDDAAYTEQAME
QSILDNRYDLQYVLYLLALHRQLRARLADYDYDRHMGGALYLFLRGTGSASRGVFFTRPP
RELIERLDRLFQGKPEQPKAEPAWEQGVLL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgacccggcaagcacctttggccctggcgttcccgctacggggcagccaactgatcgaa
gccagcgccggtactggcaagacttttaccatctcggcgctctacctgcgtctggtgctg
ggacacggcggcgaactggccgggttcggtcgcgagttgttgccaccgcagattctggtg
gtgaccttcaccgacgcggcgaccaaggagctgcgtgaacggattcgcacccgcctggct
gaagctgcgcgcttcttccgcgaggaaaccaccgcgcccgacgcgctgattgccgagttg
cgcgatcagttcgccgccgagcaatggccgggttgcgccagccgcctggatatcgccgcg
caatggatggacgaggccgcggtctcgaccatccacagttggtgccagcgcatgttgcgc
gagcacgcgttcgacagcggcagcctgtttacccagaccctggaaaccgaccacagcgat
ctgctgggtgaagtgctgcgcgattactggcgcctgttttgctacccgatgcagggcgat
gcactgaactgggtacgggccaactggggtggacccgcggccttgctgccgagggtgcgt
gcgctgtttggcagcgagcgtgaagtggatcaggagcagacgccggcgcaactgatcgaa
gcttgtcttttggaacgacgcgccgccctggtgcagctcaaggcaccctggcagcaatgg
gccgcgcagctgcgggagatctgcttgcagggcgtcgccagcaaggcggtcgatggccgc
aagatgcaggcccgttacttcgagccctggttcgaaaagatcaccgcctgggccgaagac
gaggccatagagcaactggatatcggcaccggcttcagccgcctgacccccgaaggcatg
gccgaggcctggaagggcgatgcgccggatcatcccgcactggaggccatggtcgggctc
aaggccgcgctcgatgccttgccgagccccgatgccgcggtgttgcaacacgccgcgtgt
tgggtcggcgcgcgcttcgaagaggaaaagcgccggcgggccgagatgggcttcgacgac
atgctgctgcgcctcgacgccgcgttgcaggccgagggtggcgagcggctggcgacgctg
attcgcgagcagttcccggtagccctgatcgacgaattccaggacaccgacccggtgcag
taccggatcttcgaaagcatctaccgcatcgaggacaacaatcccgagaccgggctgttc
ctgatcggcgaccccaagcaggcgatctacgcgttccgcggcgcggacatttacacctac
ctgcgtgctcgccaggccaccagcggtcgcttgcataccctgggcaccaacttccgttcc
agccacgccatggtcaaggcggtgaaccacgtattcgagcgtgccgaatcccgtgagcaa
gggcgcggcgcgttcctgttccgggagaaaagcggagagaacccggtgccgttcctggcg
gtggcatcccaggggcgcaaagagcagttacagagagaagggcaggtggtgccggcgctg
aatatctggcacctgcccacggagcaagccatttccggtgcgctgtaccggcagcaactg
gcggcggcctgcgccagcgaaatcgtcgccttgctcaacggcgggcagcaggccagcgtc
ggcttcgcccgtgacggccagcccttcaagggattgctgccggcggacatcgccattctg
gtccgcgatggcaaggaggctcaggccgtgcgcgctgagctggctgcgcgcggggtgcgc
agcgtgtacttgtcggacaaggactcggtattcgccgcccaggaagcccacgacctgctg
gcctggctcaaggcctgtgccgagccggatatcgagcgcccgctgcgcgccgcgctggcc
tccatcaccctgaacctgccgctggtggagctggagcgcctgaaccaggacgaattggcc
tgggagagccgggtcatgcagtttcgcggttatcgcctgatctggcgcacccagggtgtg
ctgccgatgctgcggcgcctgttgcatgacttccagttgccccaggcgttgatcgcccgc
agtgatggcgaacgggtgctgaccaacctgctgcacttgtccgaactgttgcagcaggcg
gctgccgaactggatggcgaacaagcgctgatccgccatctggccgagcacctggccctg
tccgggcaggctggcgaagaacagatcctgcgtctggaaagcgacgaacagctggtcaag
gtggtgaccatccacaagtccaagggcctggagtacccgctggtgttcctgccatttatc
tgttcggccaagccggtggatggcagtcgcctgccgctgcattaccacgacgaatcgggc
aaggcccaggtgacgttgcggccgaccccggagctgattgcccaggccgacgacgagcgt
ctggccgaggacctgcgcctgttctacgtggctctgacccgtgcccagcatgcctgctgg
ctgggtgtcgccgacctcaagcgcggcaaccacaacagctcggtattgcacctttcggcc
ttgggttatctgttgggcggcggtgcgctgttgaacgagtccagtggcctggcgcgctgg
ctgcaagacctgcagcaaggctgcgaggccatgagtgtcggggaaatgcccagcgccacc
gacagccgtttccatccgccacgcaacgacgccaccctgttggcgcccctggctcccaag
cggcgcgccgcggaaaactggtggatcgcttcctatagtgccctgcgcatcagtgacagc
ctgggcgccggcaataccgaggcgccggaaagcccgcaggcgcagaaactcttcgacgac
gaacgcctcgaccccgatgccccgcgtgaagtcgtggccagcggcgcggatatccatcgc
ttcccccgtggaccgaaccccgggaccttcctccacggcctgctggagtgggccggtgat
gagggttttgccgccgaccctgctgccatcgaggatgccatcggccggcgctgtaatcgc
cgcggttgggaaggctggattcggaccctgagcgattggttgcggcacttgttgcaactg
cctttgccagccggggcggggcggccaccggtggtgctcgcgcagttgagccaataccgg
gtcgagatggaattctggttcgccagccacaaggtcgacgtgctcaagctcgacgagctg
gtgcgccagtacacccatcaaggcgtgccgcgggtgaccgccgaaccggtcctgctcaac
ggcatgttcaagggctttatcgacctgaccttcgagcatgaagggcgctattacgtggcc
gactacaaatccaactggctgggcgtggatgacgccgcctataccgagcaggccatggaa
caatcgattctcgacaaccgttacgacctgcaatacgtgctgtacctgctggccctgcat
cgccagttgcgcgcgcgcctggcggactacgattacgaccggcacatgggcggcgccctg
tatctgttcttgcgcggcacgggctcggccagccgcggcgtgtttttcacccggccgccc
cgtgagctgatcgagcgcctggaccgcttgttccagggaaaacctgagcagcccaaggcc
gagccggcgtgggaacagggagtattgctgtga
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