Pseudomonas chlororaphis subsp. aurantiaca: JM49_29500
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Entry
JM49_29500 CDS
T03338
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp00250
Alanine, aspartate and glutamate metabolism
pcp00310
Lysine degradation
pcp00350
Tyrosine metabolism
pcp00650
Butanoate metabolism
pcp00760
Nicotinate and nicotinamide metabolism
pcp01100
Metabolic pathways
pcp01120
Microbial metabolism in diverse environments
Module
pcp_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
JM49_29500 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
JM49_29500 (gabD)
00310 Lysine degradation
JM49_29500 (gabD)
00350 Tyrosine metabolism
JM49_29500 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
JM49_29500 (gabD)
Enzymes [BR:
pcp01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
JM49_29500 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
JM49_29500 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
JM49_29500 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AIS15674
UniProt:
A0AAJ0ZNQ0
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Position
complement(6449629..6451071)
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AA seq
480 aa
AA seq
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MQLKDAQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAVETRRAIEAADKA
LPAWRALTAKERATKLRRWYELLIENQDDLGRLMTLEQGKPLAEAKGEIAYAASFIEWFA
EEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVIK
PASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSFTGSTEIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDS
VYDAFAEKLKAAVAKLKIGNGLEEGTTTGPLIDEKAVAKVQEHIADALGKGATLLAGGKP
MEGNFFEPTILVNVSKDAAVAKEETFGPLAPLFRFKDEAEVIAMSNDTEFGLASYFYARD
LGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttaaagacgcccagttgttccgccagcaagccttcatcgatggggcttgggtc
gacgcggataacggccagaccatcaaagtgaacaacccggcaacgggcgaaatcctcggc
accgtgccgaagatgggcgcggttgaaacccgccgtgccatcgaagccgccgacaaggcc
ctgccggcctggcgtgcgctgaccgccaaggagcgggcgaccaagctgcgtcgctggtat
gagctgctgatcgaaaaccaggacgacctcggtcgcctgatgaccctggagcagggcaag
ccactggccgaagccaagggcgaaatcgcctatgccgcctccttcatcgaatggttcgcc
gaagaagccaagcgcatctacggcgatgtgattcccggccaccagccggacaaacgcctg
atcgtgatcaagcagccgatcggcgtgaccgcggccatcaccccgtggaacttcccggcg
gcgatgatcactcgtaaagccggcccggccctggccgcaggctgcaccatggtgatcaag
ccggcttcacagactccgttctccgccctggccctggtcgagctggcacaccgtgccggc
atcccgaaaggcgtgctcagcgtggtcaccggcagcgccggcgacatcggcggcgagctg
accagcaacccgatcgtgcgcaagctgtccttcaccggctcgaccgaaatcggtcgccag
ctgatggccgaatgcgccaaggacatcaagaaagtctccctggagctgggcggcaacgct
ccgttcatcgtgttcgacgacgcggacctggataaggccgtcgaaggcgcgatcatttcc
aagtaccgcaacaacggccagacctgcgtctgcgccaaccgcctgtacatccaggactcg
gtctacgacgccttcgccgagaagctcaaggccgcggtggccaagctgaagatcggcaac
ggcctggaagaaggcaccaccaccggtcctttgatcgacgaaaaagccgtggccaaggtc
caggaacacatcgccgacgccctgggcaaaggcgcgaccctgctggccggcggcaagccg
atggaaggcaacttcttcgagccgaccatcctggtcaacgtgtcgaaagacgcggccgtg
gccaaggaagaaaccttcggcccgctggcgccgctgttccgtttcaaggacgaagccgaa
gtgattgcgatgtccaacgacaccgagttcggcctggcctcgtacttctacgctcgcgac
ctgggccgtgtgttccgtgtggccgaagccctggaatacggcatggtcggcgtcaacacc
gggttgatctccaacgaagtcgcgccgttcggtggcatcaaggcttcgggcctgggccgt
gaaggctccaagtacggcatcgaggattacctggaaatcaaatacctctgcctgggcatc
tga
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