Pseudomonas chlororaphis subsp. aurantiaca: JM49_29905
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Entry
JM49_29905 CDS
T03338
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JM49_29905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcp03021
]
JM49_29905
Transcription machinery [BR:
pcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JM49_29905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
PhyR_sigma-like
Sigma70_r4
HTH_29
HTH_23
GerE
HTH_24
MPAB_Lcp_cat
HTH_40
HTH_11
HD_assoc
HTH_Tnp_ISL3
PapC_N
Motif
Other DBs
NCBI-ProteinID:
AIS15752
UniProt:
A0AAJ0ZR03
LinkDB
All DBs
Position
6569497..6569997
Genome browser
AA seq
166 aa
AA seq
DB search
MSSPEFAVQALYSHHHGWLNTWLRSRLGNAADAADLAQDTFVRLLQRTERLELKAPRAFL
RTIARGLVIDHWRREEIERAYLETIAHLPEAEAPSEEARALVLELLESIARMLEGLKPKV
RKAFLLAQCEGLTHKQIAEQMGLSLRSVERYVADALFHCYLLRYEA
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcacctgagttcgcggtacaggcgctttacagccatcaccatggctggctcaac
acatggttgcgcagccggctgggcaacgccgccgatgcggccgacctggcgcaggacacg
ttcgtgcgcctgttgcagcgcaccgaacgcctcgaactcaaggccccgcgcgcctttctg
cggaccatcgcccgcggcctggtgatcgaccactggcgccgcgaggaaatcgaacgcgcc
tacctggaaaccatcgcccatctgccagaagccgaagcccccagcgaggaagcccgcgcc
ctggtgctggagctgctggaaagcatcgcgcgcatgctcgaaggcctgaagccgaaggtg
cgcaaggcattcctgctggcccagtgcgaaggcctgacccacaagcagatcgccgaacag
atggggctgtccctgcgttcggtggagcgttacgtggccgacgcgctgttccactgctac
ctgctgcgctatgaggcgtga
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integrated database retrieval system
