Pseudomonas citronellolis: PcP3B5_10160
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Entry
PcP3B5_10160 CDS
T04637
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcq
Pseudomonas citronellolis
Brite
KEGG Orthology (KO) [BR:
pcq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcq03016
]
PcP3B5_10160 (rtcB)
Enzymes [BR:
pcq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PcP3B5_10160 (rtcB)
Transfer RNA biogenesis [BR:
pcq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PcP3B5_10160 (rtcB)
Prokaryotic type
tRNA splicing ligases
PcP3B5_10160 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMO74500
LinkDB
All DBs
Position
complement(1083013..1084233)
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AA seq
406 aa
AA seq
DB search
MKTPAPTLLEVAGGKPIKLWTQGVPVEDEARQQLMNTARLPFIFRHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLLAADLPDNLHGLRSAIEKAVPHGKTFGRH
DQGAWNEVPAHADQAWKGLARRFRAITDKYPRLEKTNNRNHLGTLGTGNHFIEVCLDEAG
RVWFMLHSGSRGVGNAIGCLFIELAQADMRQHLANLPDKDLAYFEEGSRHFDDYVEAVGW
AQDFARQNRELMMQAVIAAARKVIRKPFEASLEAVNCHHNYVQRERHFGREVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRSMSRTQAKKRFSVEDQVRATA
HVECRKDKDVIDEIPMAYKDIDAVMAAQRDLVEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccccagcccccaccctgctcgaagtcgccggcggcaagccgatcaagctctgg
acccagggcgtgcccgtggaagacgaggcgcgccagcagctgatgaacaccgcgcgcctg
ccgttcatcttcaggcacctggcggtgatgcccgacgtgcacctgggcaagggctcgacc
atcggcagcgtgatccccaccgtcggcgccatcatcccggccgcggtcggcgtagacatc
ggctgcggcatgatcgccgcacgcacctcgctgctcgccgccgacctgccggacaacctg
cacggcctgcgcagcgccatcgagaaggcggtgccccacggcaagaccttcggccgccac
gaccagggcgcctggaacgaggtgccggcccacgccgaccaagcctggaagggcctggcc
cggcgcttccgcgccatcaccgacaagtacccgcgcctggagaagaccaacaaccgcaac
cacctgggcaccctgggcaccggcaaccacttcatcgaggtctgcctggacgaggccggg
cgcgtctggttcatgctgcacagcggctcgcgcggggtgggcaacgccatcggctgcctg
ttcatcgaactggcccaggccgacatgcgccagcacctggccaatctgccggacaaggac
ctggcctacttcgaggaaggcagccggcacttcgacgactatgtcgaggcggtgggctgg
gcccaggacttcgcccggcagaaccgcgagctgatgatgcaggcggtgatcgccgcggcg
cgcaaggtgatccgcaaacccttcgaggccagcctggaagcggtgaactgccaccacaac
tacgtgcagcgcgagcggcatttcggccgcgaggtgctggtcacgcgcaagggcgcggtg
tcggcgcagaagggccagctgggcatcattcccggctccatgggggcgaagagcttcatc
gtccgcggcctgggcaacgaagaagcgttctgctcctgcagccacggcgccgggcgcagc
atgagccgcacccaggcgaagaagcgcttcagcgtcgaggaccaggtgcgcgccaccgcc
cacgtcgaatgccgcaaggacaaggacgtgatcgacgagatccccatggcctacaaagac
atagacgcagtgatggccgcccagcgcgacctggtggaagtggtgcacaccctgcgccag
gtggtctgcgtgaagggttga
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