Pseudomonas citronellolis: PcP3B5_19550
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Entry
PcP3B5_19550 CDS
T04637
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcq
Pseudomonas citronellolis
Pathway
pcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PcP3B5_19550 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcq03019
]
PcP3B5_19550 (rne)
03009 Ribosome biogenesis [BR:
pcq03009
]
PcP3B5_19550 (rne)
Enzymes [BR:
pcq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PcP3B5_19550 (rne)
Messenger RNA biogenesis [BR:
pcq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PcP3B5_19550 (rne)
Ribosome biogenesis [BR:
pcq03009
]
Prokaryotic type
rRNA processing factors
PcP3B5_19550 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMO75409
LinkDB
All DBs
Position
complement(2117523..2120780)
Genome browser
AA seq
1085 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKNPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEELQW
DLDYLLQLWGAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDEHLETPHF
EVQRLRDDNPDLLVGHTSYEMAQVEHEEVQPVSATRTLVRQEAAVKTVSPQTPAPQQAEQ
AAAPQPVEAAKPMPQPSLFQGLVKSLVSLFAGKEEEAKPAVSAEKPASERSSTPEERRNG
RQQNRRRDGGRRDDERKPREERGERNERRREERAERPAREERQPREERAERQPREERQPR
EERAERQPREERQPREERAERQPREERQPREERAERQPREERAERQPREERQPREERAER
QPREERQPREERAERQPGEERQPREERQPREERGERRERGERQPREERQAREAALEAEEP
NNEELLEQDDQEGSDDDRPRRRSRGQRRRSNRRERQREVGVEGPEAGEQPQGSESPSAPA
LAATGVAAVAVVAEQVVEAASEQTAEPAAAVEAGADTVVVTETREESAGEQIVEFSLQPS
ESAPAAAESVEQPAAQAVVEAAPVVETAHVEPQVVETVAQAEPAVAAPSQDEAQPAANAT
GRALNDPRERRRLQREAERLAREAAEAAAAAPAVVETAGVEQAAEVEAIAEQQVEAAEES
VVEAAQETVEASATTEAAEAPAAEAAEAAEAAEAAEGEQAIQAVEEQVEADKAEQHREEV
EKHHG
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcaacccgaagagttgcgtgtagcgctggtagat
ggccagcgtctgttcgacctggacatcgagtccggcgcgcgcgaacagaagaaggccaac
atctacaagggccgcatcacccgcgtcgagcccagcctggaagccgccttcgtcgacttc
ggcgccgagcgccacggcttcctccccctcaaggaaatttcccgcgagtacttcaagaag
aaccccgaagggcgcatcaacatcaaggatgtgctcagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagaacgcggcaacaagggcgcggccctgaccaccttcatcagcctg
gccggccgctacctggtgctgatgccgaacaacccccgcgccggcggcatctcccgccgc
atcgagggcgaagagcgcaacgaactgcgcgaagccctgaacggcctgaacgcccccgcc
gacatgggcctgatcgtccgcaccgcgggcctgggccgcagctccgaagagctgcaatgg
gacctggactacctgctgcaactgtggggcgccatcaaggaagcctccggcgagcgcggc
gcgcccttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtaccaggacagcgtt
ccgctgttcaaccgcttccagatcgagagccagatcgagaccgccttccagcgcgaagtg
aagctgccctccggcggctccatcgtcatcgacccgaccgaggccctggtctccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgcgtg
cgcgaagccctcgaggccgaccgcgcgcgcgtgcaggtcgggcgcatctcgcgcttcggc
ctgctggagatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtc
tgcccgcgttgcaacggccagggcatcatccgcgacgtggaatccctgtcgctggccatc
ctgcgcctgatcgaggaagaagcgctgaaggaccgcaccgcggaagtccgcgcccgcgtg
cccttccaggtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgag
ctgcgcacccgcgcgcgcatcttcatcctgccggacgagcacctggaaaccccgcacttc
gaagtgcagcgcctgcgtgacgacaacccggacctgctggtcggccacaccagctacgag
atggcccaggtcgagcacgaggaagtccagccggtcagcgccacccgcaccctggtacgc
caggaagccgcggtgaagaccgtctccccgcagactcccgccccgcagcaggccgaacag
gccgccgctccgcaaccggtggaagccgccaagccgatgccgcagccgagcctgttccag
ggcctggtcaagtcgctggtgagcctgttcgccggcaaggaagaagaagccaagccggcc
gtcagcgcggaaaaacccgccagcgagcgcagttcgacgccggaggagcgccgcaacggc
cgtcagcagaaccgtcgccgtgacggcggccgtcgcgacgacgagcgcaagccccgcgag
gagcgtggcgagcgcaacgagcgccgtcgtgaagagcgcgccgagcgcccggcccgcgaa
gaacgccagccccgcgaagaacgcgccgaacgccagccgcgcgaggagcgtcaaccgcgc
gaagagcgtgccgagcgtcagccgcgcgaggaacgtcagccgcgtgaagagcgcgccgag
cgtcagccccgcgaggaacgtcagccgcgcgaagagcgtgccgagcgccaaccgcgtgaa
gagcgtgccgagcgtcaaccccgcgaggaacgccagccgcgtgaagagcgcgccgagcgc
cagccccgcgaggagcgccaaccgcgtgaagaacgtgccgagcgccagccgggtgaagag
cgtcagccccgtgaggaacgccagccgcgcgaagagcgtggtgagcgtcgcgaacgtggc
gaacgccagccccgcgaggagcgccaggcccgcgaagccgcgctggaagccgaagagccg
aacaacgaggaactgctggagcaggacgaccaggaaggcagcgatgacgatcgtccgcgc
cgccgctcccgtggccagcgccgccgcagcaaccgccgcgagcgtcagcgcgaagtcggc
gtggaaggcccggaggccggtgagcagccgcaaggcagcgagtcgccgtccgccccggcc
ctggccgcaaccggcgttgccgcggtagccgtggtcgccgagcaggtcgtcgaagccgcc
agcgagcaaaccgccgagccggccgctgccgtcgaagccggcgccgacaccgtcgtggtc
accgagacccgcgaggaaagcgccggcgagcagatcgtcgagttcagcctgcagccgagc
gaatccgccccggccgccgccgaatcggtcgagcagcctgctgcgcaagccgtggtcgaa
gccgctccggtcgtcgagaccgctcacgtcgaaccccaggtggtcgaaacggtcgcccag
gccgagcctgctgttgccgcgccgagccaggacgaagcccagccggcagccaacgccacc
ggccgcgccctgaacgacccgcgcgagcgtcgtcgcctgcagcgcgaagccgagcgcctg
gcccgtgaagccgcggaagccgccgctgccgccccggccgtagtggaaaccgccggggtc
gaacaggccgccgaggtggaagccatcgccgagcagcaagtcgaggccgcggaagaaagc
gtcgtagaagcggcccaggagactgtcgaagcgtctgccaccaccgaagccgccgaagca
cccgctgccgaagctgccgaagctgccgaagctgccgaagctgccgaaggcgagcaggcc
atccaggccgtcgaggagcaagtcgaagccgacaaggccgagcagcaccgcgaagaagtg
gaaaagcaccacggctga
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