KEGG   Pseudomonas citronellolis: PcP3B5_35420
Entry
PcP3B5_35420      CDS       T04637                                 
Symbol
lafS
Name
(GenBank) RNA polymerase sigma factor for flagellar operon
  KO
K02405  RNA polymerase sigma factor FliA
Organism
pcq  Pseudomonas citronellolis
Pathway
pcq02020  Two-component system
pcq02025  Biofilm formation - Pseudomonas aeruginosa
pcq02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pcq00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PcP3B5_35420 (lafS)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02025 Biofilm formation - Pseudomonas aeruginosa
    PcP3B5_35420 (lafS)
  09142 Cell motility
   02040 Flagellar assembly
    PcP3B5_35420 (lafS)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcq03021]
    PcP3B5_35420 (lafS)
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:pcq02035]
    PcP3B5_35420 (lafS)
Transcription machinery [BR:pcq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PcP3B5_35420 (lafS)
Bacterial motility proteins [BR:pcq02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    PcP3B5_35420 (lafS)
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_38 HTH_23 UPF0122 HNH_repeat GerE
Other DBs
NCBI-ProteinID: AMO76959
LinkDB
Position
complement(3977040..3977771)
AA seq 243 aa
MNAHCALDYCNPAEAGHPAFAPGAEQQWLMRYLPLVRRVVSQLSLQANQVLDREDMEQIG
LMGLLESLRRYGTPDEQFAGFAVLRIRGAILDELRRQDWRPRQVRLQAHKVRDGIRELAR
RLGRVPTDKEILAHTGLDERAYQDYLQAEACEAIESLDALLGEGLENLVDGESALEARVL
RERMLAQALAQLSERERLVLTLYYQHELSLKEIALVLDVSDARVCQLSKQALNKACRYLS
ERS
NT seq 732 nt   +upstreamnt  +downstreamnt
atgaacgcccactgcgccctcgactactgcaaccccgccgaggcgggccacccggccttc
gccccgggcgccgagcagcaatggctgatgcgctacctgccgctggtgcggcgggtggtc
agccagctgtcgctgcaggccaaccaggtgctggaccgcgaggacatggagcagatcggc
ctgatgggcctgctggaaagtctgcgccgctacggcacgcccgacgagcagttcgccggc
ttcgccgtgctgcgcatccgcggcgccatccttgacgagctgcgccgccaggactggcgc
ccgcgccaggtgcggctgcaggcgcacaaggtgcgcgacggcatccgcgagctggcccgg
cgcctggggcgggtgcccacggacaaggaaatcctcgcccacaccgggctcgacgagcgc
gcctaccaggactacctgcaggccgaggcctgcgaggccatcgagagcctcgacgcgctg
ctcggcgagggcctggagaacctggtggacggcgagtcggcgctggaggcgcgggtgctg
cgcgagcgcatgctagcccaggccctggcacagctcagcgagcgcgagcgcctggtgctg
acgctgtactaccagcacgagctgagcctgaaggaaatcgccctggtgctcgacgtgagc
gacgcccgggtctgtcaactgagcaagcaggcgctgaacaaggcctgccgctacctgagc
gagagaagctaa

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