Pseudomonas citronellolis: PcP3B5_47570
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Entry
PcP3B5_47570 CDS
T04637
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcq
Pseudomonas citronellolis
Pathway
pcq03030
DNA replication
pcq03430
Mismatch repair
pcq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PcP3B5_47570 (dnaE)
03430 Mismatch repair
PcP3B5_47570 (dnaE)
03440 Homologous recombination
PcP3B5_47570 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcq03032
]
PcP3B5_47570 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcq03400
]
PcP3B5_47570 (dnaE)
Enzymes [BR:
pcq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PcP3B5_47570 (dnaE)
DNA replication proteins [BR:
pcq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PcP3B5_47570 (dnaE)
DNA repair and recombination proteins [BR:
pcq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PcP3B5_47570 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AMO78145
LinkDB
All DBs
Position
complement(5259815..5263342)
Genome browser
AA seq
1175 aa
AA seq
DB search
MTASFVHLRLHSEYSLVDGLVRVKPLCKAVAGAGMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADIWLASRDEDGPLSRLSLLVMNAKGYRNLTELISRGWQEGQRNGEIIIERDWV
KEAAEGLIALSAAKEGEIGHALLDGEDALADSLLAEWMEVFPDRFYLEVQRTARVNDEEH
LHAAVALAERSGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSRNYSDQQYLK
SPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPNFPIPIEGMDINDYLRHVSYEG
LEERLAVLLPKDTPNYEEKRQVYVDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDYV
ADAYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADKLSKMIPFEVGMTLDKAFEQE
EMLRDFLKSDEEAQEIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIIHRIQRKAGDENLVDIDRIPLDDKKTY
DLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHG
REEISYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKP
EEMAKQRGGFIEGCANNGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTH
WAAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDDDNQIVYGLGA
IKGVGEGPVEAITECRAEGGPFKDLFDFCDRIDLKRINKRTLDALIRAGALDRLGPYFHE
EPKAYLADIDRNRAVLLASMEEAIKAAEQTSRSHDSGHMDLFGGLFAEPEADVYANHRKA
KELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTVAGLIVNLR
VMKNKRGDKMGFVTLDDRSGRIEASLFAEAFAANQGLLQTDAMVVIEGEVSQDDFSGGLR
LRAKRVMGLEEARTALAESLRLKVAADALKGDRLRWLAELCGRHRGNCPVTVDYSSSDAR
ALLQFGDDWRIDPADALIQALRDQFGRDNVFLNYR
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctccttcgtccacctgcgtctgcactccgagtactccctggtcgacggcctg
gtcagggtcaaaccgttgtgcaaggcagtggccggcgccggcatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagaccgccatgggcgccggc
atcaagccgatctgcggcgccgacatctggctggccagccgcgacgaggacggcccgctc
agccgcctgagcctgctggtgatgaacgccaagggctaccgcaacctcaccgagctgatc
tcccgcggctggcaggaaggccagcgcaacggcgagatcatcatcgagcgcgactgggtg
aaagaggccgccgaaggcctgatcgcgctatccgcggccaaggaaggggagatcggccat
gccctgctcgacggcgaggacgcgctggccgactcgctgctggccgagtggatggaagtc
ttccccgaccgcttctacctggaagtgcagcgcaccgcgcgggtcaacgacgaggaacac
ctgcacgccgccgtggcgctggccgagcgcagcggcgcgccgctggtggccaccaacgac
gtgcgcttcatcaagcaggaagacttcgaggcccacgagacccgtgtgtgcatcggcgaa
ggccgcgccctggacgacccgcgccgctcgcgcaactactccgaccagcagtacctgaaa
tcgccggcagaaatggccgagctgttcagcgacctgcccgaggccctggaaaataccgtc
gagatcgccaagcgctgcaacatcgaagtgcagctgggcaagtacttcctgcccaacttc
ccgattcccatcgaaggcatggacatcaacgactacctgcgccatgtctcctacgagggg
ctggaggagcgcctggcggtgctgctgcccaaggacacgccgaactacgaggaaaagcgc
caggtctacgtcgaccgcctggagttcgagttgggcaccatcatccagatgggcttcccc
ggctacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggcgtgccggtg
gggccaggccggggttcgggtgccggctcgctggttgcctacgtgttgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgaacgcttcctcaaccccgaacgtatctcc
atgcccgacttcgacgtggacttctgcatggaaggccgcgaccgggtgatcgactacgtg
gccgacgcctacgggcgcaacgcggtgagccagatcatcaccttcggctccatggccgcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctacggcctggccgacaag
ctgtcgaagatgatccccttcgaagtcggcatgaccctggacaaggccttcgagcaggag
gaaatgctccgcgacttcctcaagtccgacgaggaagcccaggaaatctgggacatggcc
ctgaagctggaaggcgtcacccgcggcaccggcaagcacgccggcggcgtggtgatcgcg
ccgaccaagctcaccgacttctcgcccatcgcctgcgacgaagagggcggcggcctggtg
acccagttcgacaaggacgacgtggaggccgccggcctggtgaagttcgacttcctcggc
ctgcgcaccctgaccatcatcaagtgggcgatggagatcatccatcgcatccagcgcaag
gccggcgacgagaacctggtcgacatcgaccgcatcccgctggacgacaaaaagacctac
gacctgctgcagaaggccgagaccaccgcggtgttccagctggaatcgcgcggcatgaag
gagctgatcaagaagctcaagccggactgtctggaagacctgatcgcactggtggcgctg
ttccgtcccggcccgctgcagtcgggcatggtggacgacttcatcaaccgtaagcacggc
cgcgaggaaatctcctacccgcacccggactaccagtatgcgggcctggagccggtgctc
aagcccacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatg
gccggctacaccctcggcggcgcggacatgctgcgccgcgccatgggcaagaagaagccc
gaggagatggccaagcagcgcggcggcttcatcgagggctgcgccaacaacggcatcgac
aaggacctggcgggcaacatcttcgacctggtggaaaagttcgccggctacggcttcaac
aagtcgcactcggccgcctacggcctggtgtcctaccagaccgcctggctgaagacgcac
tgggccgcgcccttcatggccgcggtactcaccgcggatatgcagaacactgacaaggtg
gtgacgctgatcgaagaatgccggcacatgaagctgcgcatcgtcgccccggacgtgaac
aactccgaattccgcttcaccgtcgacgacgacaaccagatcgtctacggcctgggcgcg
atcaagggcgtcggcgaaggcccggtggaagccatcaccgaatgccgcgccgagggcggg
ccgttcaaggacctgttcgacttctgcgaccgcatcgacctcaagcgcatcaacaagcgc
accctcgatgcgctgatccgcgccggcgccctggaccgcctggggccgtatttccacgaa
gagcccaaggcctacctggccgatatcgaccgcaaccgcgcggtgctgctggcgtccatg
gaggaagccatcaaggccgccgagcagacctcgcgcagccacgacagcggccacatggac
ctgttcggcgggctgttcgccgagccggaagccgacgtttacgccaaccaccgcaaggcc
aaggaactgaccctcaaggaacgcctgaaaggcgagaaggacaccctcggcctgtacctc
accggccacccgatcgacgagtacgaaggcgaggtgcgccgcttcgcccgccagcgcatc
gtcgagctgaagccggcgcgcgacacccagaccgtggccgggctgatcgtcaacctgcgg
gtgatgaagaacaagcgcggcgacaagatgggcttcgtcaccctcgacgaccgctccggg
cgcatcgaggcctcgctgttcgccgaggccttcgccgccaaccagggcctgctgcagacc
gacgccatggtggtgatcgagggcgaggtcagccaggacgacttctccggcggcctgcgc
ctgcgcgccaagcgcgtcatgggcctggaggaggcgcgcaccgcgctggccgagagcctg
cggctgaaggtcgccgcggatgcgctcaagggcgaccgcctgcgctggctggccgagctg
tgcggccgccatcgcggcaactgcccggtcaccgtcgactacagttccagcgacgcccgc
gccctgctgcagttcggcgacgactggcgcatcgacccggccgatgcgctgattcaggca
ttgcgtgaccagttcggacgcgacaacgtcttcctcaactaccgctag
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