Pseudomonas citronellolis: PcP3B5_60140
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Entry
PcP3B5_60140 CDS
T04637
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pcq
Pseudomonas citronellolis
Pathway
pcq00300
Lysine biosynthesis
pcq00470
D-Amino acid metabolism
pcq01100
Metabolic pathways
pcq01110
Biosynthesis of secondary metabolites
pcq01120
Microbial metabolism in diverse environments
pcq01230
Biosynthesis of amino acids
Module
pcq_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pcq00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PcP3B5_60140 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PcP3B5_60140 (dapF)
Enzymes [BR:
pcq01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PcP3B5_60140 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
D-ser_dehydrat
Motif
Other DBs
NCBI-ProteinID:
AMO79373
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Position
6708654..6709484
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHVLPRHVKSWGDRNTGVGFDQLLIVEPPGSPEVDF
RYRIFNADGSEVEQCGNGARCFARFVLDKRLTMKKTIRVETKGGIIELSVANDGQVTVDM
GAPRLAPEQVPFVADAEATSYAVEVDGQTVELAAVSMGNPHGVLRVDDVDSAPVRTLGPK
LEVHPRFPAKANIGFLQVLDANHARLRVWERGVGETLACGTGACAAAVAGIRQGWLRSPV
QIDLPGGRLNIEWAGPGQPVMMTGPAVRVYEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctactgcgcttcaccaagatgcacgggctgggcaatgacttcatggtcctcgacctg
gtcagccagcacgcccacgtgctgccccgccacgtcaagagctggggcgaccgcaacacc
ggcgtcggcttcgaccagttgctgatcgtcgagccgccgggtagccccgaggtcgacttc
cgctaccgcatcttcaacgccgacggcagcgaagtggaacagtgcggcaacggcgcgcgc
tgcttcgcccgcttcgtgctggacaagcgcctgaccatgaagaagaccatccgcgtcgag
accaagggcggcatcatcgagctcagcgtcgccaacgacggccaggtcaccgtggacatg
ggcgcgccgcgcctggcgccggaacaggtgcccttcgtcgccgacgccgaagccaccagc
tacgccgtggaagtcgacgggcagaccgtcgagctggccgccgtctccatgggcaacccc
catggcgtgctgcgggtggacgacgtcgacagcgccccggtgcgcaccctcggcccgaag
ctggaagtgcacccgcgcttcccggccaaggccaacatcggcttcctccaggtactcgac
gccaaccatgcgcgcctgcgcgtgtgggagcgcggcgtcggcgagaccctggcctgcggc
accggcgcctgcgccgccgcggtggccggcatccgccagggctggctgcgctcgccggtg
cagatcgacctgccgggcggccgcctgaacatcgagtgggcaggccccggccagccggtt
atgatgaccgggcccgccgtgcgggtgtacgaaggccaggtccgcctgtaa
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