Psychrobacter cryohalolentis: Pcryo_0855
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Entry
Pcryo_0855 CDS
T00350
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K14159
ribonuclease HI / DNA polymerase III subunit epsilon [EC:
3.1.26.4
2.7.7.7
]
Organism
pcr
Psychrobacter cryohalolentis
Pathway
pcr03030
DNA replication
pcr03430
Mismatch repair
pcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pcryo_0855
03430 Mismatch repair
Pcryo_0855
03440 Homologous recombination
Pcryo_0855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcr03032
]
Pcryo_0855
03400 DNA repair and recombination proteins [BR:
pcr03400
]
Pcryo_0855
Enzymes [BR:
pcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pcryo_0855
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
Pcryo_0855
DNA replication proteins [BR:
pcr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pcryo_0855
RNase H
Pcryo_0855
DNA repair and recombination proteins [BR:
pcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pcryo_0855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_H
RNase_T
Rv2179c-like
RNase_H_2
DUF1451
Motif
Other DBs
NCBI-ProteinID:
ABE74636
UniProt:
Q1QCG7
LinkDB
All DBs
Position
complement(1011925..1013523)
Genome browser
AA seq
532 aa
AA seq
DB search
MSENRSAAQPFNTSNAINPLAAKADTTVAYTDGACKGNPGAGGWGAHLIFSDGRTQDFYG
GDKETTNNRMELMGAIQALTHSSHEQKLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKP
VANQDLWQRLDELCQKRDVDWHWVKGHAGHAGNEKADELANLGVTSRSEDLITDVQDSTK
KKEPIMADKKPSSSDDWLNFDPLGFDMMDDELDAELLENQSYNDSVINTHAFAEENISPY
NATNSMSAIEMPDAQTPLIDTSINNHASNMVTNVEADTPKFDGDTSRANPYFKPLLPKPI
NCHQSDRQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQRGMDEEVIR
IHGISEAFLTDKPTFDQVAQSLYDFMDGAEIIAHNASFDMNFLNMEFAKVGMHDFAERVK
VTDSLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLG
IEDDAQADGGHTAHASFANLAALLLESSTDEGANQSWYASLAEDYPELKAKM
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaatcgcagcgcagcgcagccatttaacaccagtaatgccataaacccattg
gctgccaaagcagatactacggttgcttacacagatggcgcgtgtaaaggcaatcctggt
gctggtggctggggcgctcatctgatatttagcgacggacggacgcaggatttttatggc
ggtgataaagaaaccaccaataatcgtatggaattgatgggtgcgatacaagcgcttact
catagctcacatgagcagaaactcgagatttggacagactcaagttatgtcaaaaaaggc
atcactgagtggattgaaggttggaaaaaaagaggctggaagacggccagtaaaaaaccc
gtcgccaatcaagacctatggcagcgactcgatgagctctgtcagaaacgcgatgttgat
tggcattgggtcaaaggtcatgctggacatgctggtaatgaaaaagcggatgagcttgcg
aacctaggtgtgacctcacgtagtgaagatttgataacagacgttcaagatagtactaaa
aaaaaagagccaataatggctgataaaaagccatcaagcagcgatgattggctaaatttt
gatccattaggttttgatatgatggatgatgagcttgatgccgaactactagagaatcaa
agttataatgacagtgtaataaatactcatgctttcgctgaagaaaatattagtccgtac
aatgccaccaattcaatgagtgctatagaaatgccagacgcccagacgcctttgattgat
acaagcatcaataaccatgcgtccaacatggttactaatgttgaagcagatacgccaaaa
ttcgatggtgacaccagccgtgccaatccatattttaagccattgctacccaagccaata
aactgtcaccaatctgatcgtcagctgattatggataccgagaccacggggctggatccg
caaaaaggcgatcgtgtcattgaagtcggtattgtagagatgattggacgtaagttcact
ggcgaaaagctccacgtctatatcaacccacagcgcggtatggatgaagaagttattcga
attcacggtatttctgaagcatttttaacggacaaaccaacctttgatcaagtcgcgcag
tcgctctatgactttatggatggtgcagaaatcatcgctcataatgcctcgtttgatatg
aacttcttaaatatggagtttgccaaagttggcatgcatgactttgctgagcgagtaaaa
gtgaccgactcgctggtcatggcaaagcagcagtatcctggacagaaaaatactcttgat
gctctcgtacgtcgtttagacgtgggcaagcaagaccgtacctttcacggggcattacta
gattcagagattttagcagaagtctatttggcgatgactggcggacaagtaacgctaggc
attgaggatgacgcgcaagcggatggcggacacacagcccatgctagctttgccaattta
gcggctttattgcttgagtcaagtactgatgagggcgccaatcaaagctggtatgcgtcg
ctcgcagaagattatcctgagctgaaagccaaaatgtaa
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