Psychrobacter cryohalolentis: Pcryo_1124
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Entry
Pcryo_1124 CDS
T00350
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcr
Psychrobacter cryohalolentis
Pathway
pcr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pcryo_1124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcr03021
]
Pcryo_1124
Transcription machinery [BR:
pcr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pcryo_1124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ABE74905
UniProt:
Q1QBP8
LinkDB
All DBs
Position
complement(1353403..1355349)
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AA seq
648 aa
AA seq
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MSDASKRVFMNDKSVSKSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIVQM
LTDVGIKIFESAPDADDILMNDDSSDDDMAADEAAAVLASVETEPGRTTDPVRMYMREMG
TVDLLTREGEIAIAKRIEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVITGFL
DPETEEDKIAAQEAKEAAKEERERIKEEKENPPIIKEKAKVKSGLDDDEEDDEEVEEDAE
EETSGIDPEEVRLRLEEIEHLFIKAKQALLDYGRGSAQANEAYEQLASRFMMLKLNNRLS
DQVMAIMHDVYDDVRKHERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAF
AATLEKVADDVILLQRAIRDYEHKLEMEIHDMKDVARRMAIGEAKARRAKKEMVEANLRL
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEAKVRKVLKIAKEPIS
METPIGDDEDSHLGDFIEDGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGID
MPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgcaagtaagcgagtatttatgaacgataagtcagtttctaagtccacatct
caactggccaccttaatccaaatgggtaaagagcaagggtatttaacctatgctgaggtg
aatgaccaactgcccgactctattaccgaaagcgatcagatcgaagatattgtacaaatg
ctaaccgacgttggcatcaaaatctttgaatctgcgcctgatgccgatgacatcttgatg
aacgatgattcaagtgatgatgacatggcagcggatgaggcagcagcggtactagcttct
gttgagaccgaacctggtcgcaccactgaccctgtgcgtatgtatatgcgtgagatgggt
acggttgatctattaacgcgcgaaggcgagattgccattgccaagcgtatcgaagaaggc
attcgtgacgtacagcatgccatgtcttactggccgggtacggtacaattcgtccttgac
gagtaccaaaaagtccaagatggcgaaaaaaagctttctgacgttatcactggtttctta
gaccctgaaaccgaagaagacaaaatcgctgctcaagaagccaaagaagcggcgaaggaa
gaacgcgagcgcatcaaagaagaaaaagaaaacccgccgatcatcaaagaaaaagccaaa
gtaaaatctgggcttgatgatgacgaggaggacgacgaggaagtggaagaggacgctgaa
gaagaaaccagcggtatcgatccagaagaagtgcgcttgcgtctagaagagatcgagcat
ctatttattaaagccaagcaagccttacttgattatggtcgtggtagtgcacaagccaat
gaagcttatgagcagctggctagccgctttatgatgctaaagctgaataaccgtctatct
gatcaagtcatggctattatgcatgatgtctatgatgacgtgcgtaagcatgagcgtcaa
atcatgcgcttggtgattcgccgtggtcgtatgccgcgcgaagagttccgtaagactttt
ccaagtaatgaaaccaacgttgattggttgattgagcgtattaaaggtaagcctgctttt
gctgccacgttagagaaagtcgccgacgatgttatcttgttacaacgtgctatccgtgat
tacgagcataagctcgagatggaaatccacgacatgaaagatgtggcgcgccgtatggct
attggtgaagccaaagcccgccgtgccaaaaaagagatggtcgaggctaacttacgtctc
gttatctcaattgccaaaaaatatacaaaccgtggtctacagttcttggatctgatccaa
gaaggtaatatcggtctgatgaaagccgtcgataaatttgaatatcgccgtggttataag
ttctcgacttatgccacatggtggattcgtcaggcaatcacccgctctatcgctgaccaa
gcacgtaccatccgtatccctgtgcatatgattgagacgattaataagatcaatcgtgtc
tctcgtcaattgctacaagaaatgggacgcgagccaacgcctgaggaattaggcgaacgc
ttagagatggacgaagccaaagtccgtaaagtactaaaaatcgccaaagagcctatctca
atggaaacccctatcggtgatgatgaagactcacacctaggtgattttatcgaagatggt
acgatctcaagccctgttgacgatgcgacggctgcgggtctacgtgaagcgacgcgtgat
gtattgggcaacttgactgagcgtgaagcacgcgtgctcaaaatgcgttttggtatcgat
atgccgaccgaccatactttggaagaagttggtaagcagtttgatgtgacgcgtgagcgt
attcgtcagattgaagcaaaagccttgcgtaaattgcgtcatccatcacgctctgagcat
ctgcgctctttccttgaaaatgactga
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