Psychrobacter cryohalolentis: Pcryo_1291
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Entry
Pcryo_1291 CDS
T00350
Name
(GenBank) UvrD/REP helicase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pcr
Psychrobacter cryohalolentis
Pathway
pcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pcryo_1291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcr03400
]
Pcryo_1291
Enzymes [BR:
pcr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pcryo_1291
DNA repair and recombination proteins [BR:
pcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pcryo_1291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABE75072
UniProt:
Q1QB81
LinkDB
All DBs
Position
1572196..1576650
Genome browser
AA seq
1484 aa
AA seq
DB search
MTDFTDPTNTTDSFTQSDLFDEYSDELTLSAVPERKNDVIPAVDVDLTGKHLIEASAGTG
KTWTLTGIVLRLLIEARRAPEQIIATTFTRAAAAEMRQRIHDRLVDFYQLLQWVNSLSAE
PNNKDALYPDVLQVMPESNKDKQAGKGSSVDSNAGTGMDEFNKDIAADRQAAAEKRKQVK
KDRENWLVNQAKYARLDAVMDDPINLHLTGFLLDHVHGYPMAEAIRRTALVLTTLDKLFV
GTLDSLAQKWLIEYSSETGHQQGMAIIEDSSIEQVTDSIIHDELRQFQSRLYYEQPKLYA
LMDQQGKLTAVSDHKKYVTRSLKFISAPIDEIKLEQGFDFGLYERLLNEFAQLDLVDIQP
YLNPDYRKSQGFRGGSNLTKQFDAIIDVHQKILEYQLTFNSYLNESENKILTSLQDARYP
DEDGKIKNFNKNKEKEHQTLFELETISKLMVLLDMLDSLNQHILLVLANLNRHIVLAVRD
RLPVILEERGETTFSLQMVRLNQALTGRQGDKLARYIRHHYPVALIDESQDINGEQAIMI
ESIYLPKNKRKQSDSDKQSTTNKTSHEFLLLVGDPKQAIYGFRGGDVANYNYMKAQFEKS
SLWTLDINRRSNAGVIDALNCWFGMPTETAADNKLAQLGSSIYYQHIKASKPENQLSWFN
EPTTQNSALVTEVLSAQPVSLLHLPYDKDKELEYDEFEITARHIATLLSSNQTLKGKPIQ
PSDIGVLARTKKDLKRVEDELVKLNVPTLTTSDVSIFETIMAEDVAALLSAMLYPYRHDM
INRVLTSHLYGLSIKEVKAMMTDHESGVTEGSYLSSASTKAVNNKKSYQDFITYLKQAAQ
NWQHFGVLSALHYLLDKNPVQPQGVWQALATHPEGDRHIMDLRHMMDVLAQYGIGMGEHE
LLAWFRQNIDAAPSSDWAKQYPLPTESGVQLMTIHKSKGLEFPIVYVLGMGDASRKAGNN
EKFGLYLYNAQQAPSILMQQSAESQSTGNQRRFSPVRGSATTEDCYTEIETKEGFDELRR
LGYVAFTRASEQLYVVLRDPNNKTGFELKPAFYWLESPEAKFDLPDRLKGIVGMLRGHNV
NEFYNNDSNGANALGLAGNATLATAKSITETIEYAPFAEVMKTNYFYGWAKTSFTALARQ
LDESTQALAVVDERMDDAIDIDMTESVVSSSNSGFFKPVSELSLKSEDDIRFTFVKGANA
GTFLHEIFEKIDFNNKSQWSQVIDRAVSSYQLPLVYSSAEQQSRLLQANNRENGRIPDLD
SMDATKHEALLNWFEEVLKAPLLASNQPLQSINASQRFAELEFNMGLSERFKAQDINSLF
QQYLPNEVDKHVNLVPQNKTHLYRYLRGEIDLVYEHAGKYYVVDYKSNFLGNSLSDYDVS
TLKQAMSKAGYWLQAAIYQVALHRFLAMRISDYAGNEDKYLGAVEYVFLRGVYDPNSQIA
ADLLQDVREADNSHSMPNDRYGLVTWDIPIEFIKALDALFGLPD
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgacagactttaccgacccaaccaatactactgactcatttacacaatcagatttattt
gatgaatattcagatgagctgactttatctgctgtgcctgaacgtaaaaatgatgttata
ccggcagtcgatgttgatctgacgggtaaacacctgattgaagcctcagcgggcacgggt
aaaacttggacgttgaccggtattgtactgcgcctactgatcgaagcgcgacgtgcgcca
gagcaaatcattgccacgacttttactcgagctgccgctgccgaaatgcgtcagcgtatc
cacgatcgtttggtagatttttatcagctattacaatgggtcaatagcctaagtgctgaa
cccaataacaaggatgctttatatcctgatgtactacaggtaatgcctgaaagtaataag
gataaacaagcaggtaaaggttcaagcgttgattcaaatgctgggacagggatggatgag
ttcaataaagacattgctgctgataggcaagcggcggctgagaaacgtaaacaagtaaaa
aaagatcgtgaaaactggctagttaatcaggctaaatatgcacgcttagacgccgttatg
gacgatcccattaatctgcatttgactgggtttttacttgatcatgtccacggctatcca
atggcggaggccattcgacgcactgcgctagtactaaccacgttggataagctgtttgta
ggtacactcgacagtttggcgcaaaagtggttgattgaatacagtagcgagaccggtcat
cagcaaggtatggctattattgaagacagcagtattgaacaggtgactgacagtattatc
catgatgagctgcgtcagtttcagagccgcttatactatgagcagcctaaactatatgcg
ctaatggatcagcaaggcaagctgactgcagttagcgatcataaaaaatatgtgactcgt
tcgcttaagtttatttcagcgccgattgatgagataaagctggagcaaggttttgacttt
ggtttgtatgagcgactacttaatgagtttgctcagttagatttagtagatatccagcct
tatttaaatcctgattatagaaagtctcaaggatttcgtggtggttctaatttaaccaaa
cagtttgatgccattattgatgtgcatcaaaagatattagagtatcagctgacatttaat
agctatttaaatgagagcgagaataagattttgacatcattgcaagatgccagatatcca
gatgaagatggcaaaattaagaactttaataagaataaagaaaaagagcatcagacgctt
tttgagctagaaaccattagtaagttaatggttctcttagatatgctagacagtttaaat
cagcatatattgttggtattagccaaccttaatcgccatatcgtgcttgcggtacgtgac
aggctaccagttatcttagaggagcgcggtgagacgacctttagtttacaaatggtgcgc
ttaaaccaagcattgactggccgccaaggagataagctggcgcgttatattcgtcatcat
tatcctgtggcattgattgacgagtcgcaagatattaatggcgagcaagccattatgatt
gaaagcatctatttgccaaagaataaacgtaagcagtcggacagtgacaagcaatcaacc
actaataaaaccagtcatgagtttctgttattagtgggtgatccaaagcaggctatttac
gggtttcgtggcggtgatgtggccaactacaactatatgaaagcccagtttgagaaaagt
agcctttggacgctcgatattaaccgtcgatcaaatgctggtgtgattgatgcactaaat
tgctggtttggcatgccaacggaaacggctgctgataataaattagcacagctaggtagc
agtatttattatcagcatatcaaagcttctaaaccagaaaaccagctgtcttggtttaat
gagccaactactcaaaacagtgctttagtgacagaagtgctttctgctcaaccagtgagc
ttgttgcatctaccttatgataaagataaagagcttgagtatgatgagtttgaaatcacc
gcgcgtcatattgcgaccttgctcagtagtaatcagaccttaaaaggcaaaccgattcag
cctagtgatatcggtgtgctggcacgtaccaaaaaagacttaaaacgggttgaggatgag
ctggttaagcttaatgtaccgaccttgactactagtgatgtcagtatctttgaaaccatc
atggcagaagatgtggcggcgctgctgagtgccatgctatacccatatcgtcatgacatg
atcaatcgggtgctgactagccatctgtatggcctgagtatcaaagaagtcaaagccatg
atgactgaccatgagtcaggagtgacagagggtagttatttaagtagcgctagtacgaaa
gcagttaataataaaaaaagctatcaagactttattacctacctaaaacaagcggctcaa
aactggcagcactttggtgttttgtcagcattacattacttattagataaaaaccctgtg
cagccgcaaggcgtttggcaagctctggcaactcatccagaaggcgatcgtcacattatg
gatttgcgtcatatgatggatgtcttggcgcagtatggtatcggcatgggtgagcacgaa
ctattggcgtggtttagacaaaatatagatgctgctcctagcagtgattgggctaagcaa
tacccgctaccgacagagtctggcgtgcagcttatgaccatccacaagtccaaagggctt
gagtttcccattgtctatgtattgggtatgggcgatgctagtcggaaggcgggcaataat
gaaaagtttgggctgtatctatacaacgcccagcaagctccgtcgattttaatgcagcaa
tcggcagagagtcaatcaacaggcaaccagcgccgcttctcacccgtaagaggctctgcc
accacagaagattgttataccgaaatcgagacgaaagaaggctttgatgagctgcgacgg
cttggctatgtggcatttacgcgtgccagcgagcagctttatgtggtgttgcgagatcct
aataacaaaacaggatttgagctaaagccagcgttctattggttggaatcaccagaggca
aagtttgatttgcctgataggctcaaaggcatcgtaggtatgctcagagggcataatgtc
aatgagttctataataatgacagtaatggtgctaatgcattgggcttagcaggtaacgca
acgcttgccactgctaaatctataactgagactattgagtacgcgccttttgcagaagtt
atgaaaaccaattatttttatggttgggccaagaccagttttacggctttagcccgtcag
ctagatgaatctacgcaggcgctggctgtggtagatgaacgtatggatgatgccatagac
attgatatgacagagtcggtagtatcgtccagtaatagtggtttttttaaaccagttagt
gagttgagcctcaaatcagaggatgatatccgttttacttttgtcaaaggcgccaatgcc
ggtacgtttttgcatgaaatatttgaaaaaattgatttcaataataaatcgcagtggtct
caggtgattgatagggccgttagtagttatcagctgcctttggtttatagtagtgctgaa
cagcaaagtcgactattacaagcaaataatagagaaaatggtcgtatacctgacttagat
tcaatggatgctacaaagcatgaggcattacttaactggtttgaagaggtgctaaaggcg
ccgttattagcgtccaatcaacccttacagtctatcaatgcaagtcaacggtttgctgaa
ttagagtttaatatggggctgtcagagcgctttaaggcgcaagatattaatagcctattt
cagcagtatctcccgaatgaggtggacaaacacgtcaatcttgttccacaaaacaaaacg
catttgtatcgttatctgcggggtgaaatcgatttggtgtatgagcatgctggcaagtat
tacgttgtcgattacaaaagtaattttttaggtaatagcctaagcgattatgacgtaagc
acactcaaacaagcaatgtcaaaggcaggatattggttacaagcagcgatttatcaagtc
gcgttacatcgtttccttgcaatgagaattagtgattatgcaggtaatgaagataagtat
cttggcgctgttgaatatgtctttttacggggcgtgtatgatccaaattctcaaatagct
gctgatctattgcaagatgtcagagaagctgataatagtcactcaatgcccaacgaccgc
tatggattagtcacgtgggatattccaattgagttcattaaggccctagatgcgttgttt
ggcctgccagattag
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