Psychrobacter cryohalolentis: Pcryo_1419
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Entry
Pcryo_1419 CDS
T00350
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcr
Psychrobacter cryohalolentis
Brite
KEGG Orthology (KO) [BR:
pcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcr03019
]
Pcryo_1419
Enzymes [BR:
pcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pcryo_1419
Messenger RNA biogenesis [BR:
pcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pcryo_1419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
NACHT
SRP54
T2SSE
nSTAND3
HA2_N
Motif
Other DBs
NCBI-ProteinID:
ABE75198
UniProt:
Q1QAV5
LinkDB
All DBs
Position
complement(1741710..1745975)
Genome browser
AA seq
1421 aa
AA seq
DB search
MPDTSTENQEKIQPVQAENLNAETKNTQKESVNAQQVISVANLPVLAKDEYYLSRLEREL
ARAKPSANKNSNTDGKHNVKSSNDLDKKHAQYEQLKARSQQAVQARIESIPDRLAEKLNQ
DLPVSQRGDDLIQAIIDNQVIIVAGETGSGKTTQLPKLAMLAGRGIRGQIGHTQPRRLAA
RSVANRIAEELGEQLGNTVSFKIRFNEQGTAQSVVKLMTDGILLAELGHDRFLSKYDTII
IDEAHERSLNIDFIMGYLKKLLPKRPDLKVIITSATLDTKRFSEYFSRYDNKLKRQIPAP
IFNVEGRSFPVEVRYRPLTDEPVTSSDDDSYDDFEENLPRAVVAAVEECFSDAQNKGHAD
QADILIFAATEAEIRELQEVLERHGPKHTEVLPLFARQTYEEQQRIFQPSGRGRRIVIAT
NVAETALTVPGIRYVIDLGFARISRYSYRSRVQRLPIEAISQAAANQRKGRCGRVAPGVC
IRLYSEEDFTGRPEFTEPEILRTNLASVILQMANLRLGSVDDFAFIEPPDSRLVTDGHKL
LDELGAITAKNDVPSAKQTNKPKSKQGLDHLVLTPTGQKMARMPIDPRLARMLVAGSDFD
CIREMLIVVAALAVQDSRERPVNKRQQADQKHAEFRQDDSDFLFYLSLWKALFEKDEDGN
KLSGNQRKQFTKKNYLSFPRVREWSQTHRQLVQMVTELKLTDANEAKTADKNASKEVTHS
DPTAIEDEELKAVKYGNLHRALLTGLLSTIAHKTENRGEYLAARQQKAKIFPASTVFKQI
PPWVMAFEVVETSQVFMRTVAKIEPEWIISAAGNLLKYHYFEPHWSKKTGRVKAYAQISL
FGLIIISKQLTNYEQVNLSESREIFIRDGLVTGNLGRQAPFLQHNMDKIADIERIEDKLR
RRDLLVDEESLYQFYDKKIPDHIASRKTFEDWRAEVEKTDTKYLFFTDEDVLNSQAPTTG
DFPEVWKLGDLKLPLRYIFDPASDDDGVTIRVPLVALPQLDAIELLWGVPGWRYELVLQL
LKSLPKDIRRQIVPIPDTADSLFDELQPAGGQGLLKQLCQALNRRGIMSVTTEHFNPSSI
DRYLQPQICVVDDKNRIIEKGRDLQTLQIRHASQTRQAVNEQQGAHTEFPEHFAFSKNHH
SAGVVMKQFAALVADEAGEAVSIHQYTDVNAALQAHRIGVLTLIKSRLGSKKKQLTSQVD
NIFKLAFAPLGDMEKLKTIIIDATLDATLEEHYVLFDHTADLPESANDVAVGLSEELPFT
PEEYSQTLDVLLSNFLLIGQTVIKTLKSVYTRWQRIRQSMLMLDREIFGESIEDIEDQLA
DLHLADFVYRMDYSHWQQYPRYLEALEIRIDRLEHNVEADLDGVYALDLHMERLAGRAND
KAISDYRWMVEEYRIQLFAQPMKTRMAVSPKRLSKIWDKMS
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatacttcaacagaaaatcaagaaaaaatccagcctgtacaagccgaaaatctg
aacgccgagacaaaaaatacgcagaaagagagtgtgaatgctcaacaggttatttctgtt
gctaatttacccgtgctcgcgaaggatgagtattatctcagtcgccttgagcgtgagctg
gcacgggcaaaaccgtctgctaataaaaatagcaatacggatggcaaacacaacgttaaa
agtagcaatgatttggataaaaaacacgcccaatatgagcaattaaaggctcgctcgcag
caagcggtgcaagcgcgtatagagagcattccagataggctggcagaaaaactgaatcag
gatctccctgttagccaacgtggtgatgatttgattcaggcaatcatcgataaccaagtg
attatcgttgcaggtgagacaggctccggtaaaactacgcaactgcctaagttagcaatg
ttagcagggcgcggtatacgtggccaaatagggcatacacagcctcgacgactggcggca
cgcagtgtggcaaaccgtatcgctgaagaattgggcgagcagcttggtaatacggtcagc
ttcaagattcgctttaacgagcagggcacggcgcaatctgtcgttaaactaatgactgat
ggtattttgcttgctgaacttggtcatgatcgttttttgagtaaatacgatactattatt
attgatgaagcccatgagcgtagtttaaacattgactttattatgggttatttaaaaaaa
ctgctgccaaagcgccctgatttaaaagtcattattacctcagcgacactggacactaaa
cgctttagtgaatactttagtcgctacgataataagcttaaacggcaaattcctgcgcct
atttttaatgtcgaaggacgaagcttccctgtcgaagtgcgttatcgtccgttaacagat
gagcccgtaaccagctcagacgatgatagctatgatgactttgaagaaaatctgccacgt
gcggtggttgctgcagtggaagaatgctttagcgatgcacaaaataaaggtcatgccgat
caagcagatatcttgatatttgctgcaactgaagctgagattcgtgagctccaagaggtg
cttgagcgtcatggacctaaacatacagaagtgttgccactatttgcacggcagacttat
gaagagcaacagcgtatctttcagccatcaggtcgcggccgacgtattgttatcgcgact
aacgtcgctgagacggcattgaccgtacccggcattcgctatgtgattgatttgggtttt
gcgcgtatatcacgctattcttatcgttcgcgcgtacagcgtttaccaattgaagccatc
tcgcaagctgctgccaatcagcgtaaagggcgttgtggtcgtgttgcgccgggtgtttgt
attcgtttatatagcgaagaggactttactggtcgtcctgaatttacggaacctgagatt
ttacgcactaacttagcatccgttattttacaaatggcaaatctgcgcctaggaagcgtc
gatgatttcgccttcattgagccacctgacagtcgcttggttactgatggacataaattg
cttgatgagttaggcgcgattactgctaaaaacgacgtaccttcagctaaacaaactaac
aagccaaaatcaaaacagggtctggatcatctggttctgacaccgactggtcaaaagatg
gcacgtatgccaatcgatccaaggctggcacgtatgctggtagctggtagcgattttgac
tgtatccgagaaatgctcattgtcgttgcggcgcttgctgtccaagattcacgcgagcgg
ccagtaaataagcgccagcaagcggatcagaagcatgctgaatttcgccaagatgactct
gattttttattctatttaagtctgtggaaagccctgtttgagaaagacgaagatggcaat
aagttgtctggcaatcagcgtaagcagtttacgaagaaaaactatctaagcttcccgcgt
gtacgtgagtggagtcaaacccatcgtcagttagtacaaatggtcactgagcttaagctg
actgatgctaacgaggcaaaaactgctgacaagaatgcctcgaaagaagtgactcacagt
gaccctaccgcgattgaagatgaagaactcaaagctgttaaatacggcaatttacatcgc
gcattattaacaggtctattgtctacgattgctcacaaaactgaaaatcgcggtgaatac
ttagccgctcgccagcagaaagccaaaatattcccagccagtacggtttttaagcaaata
ccaccttgggtcatggcttttgaagtggtcgaaacctcacaagtctttatgcgtaccgtt
gccaagattgaaccagaatggattatctcagccgccggtaacttattaaagtatcactac
tttgagccacattggtcgaagaagacggggcgtgtcaaagcttatgcccagatcagttta
ttcgggctgattattatcagtaagcaactgaccaactatgagcaagttaatctaagcgag
tcgcgcgagatatttatccgtgacggtctggttactggaaatttaggtagacaagcaccg
ttcttacagcataatatggataaaattgctgacattgaacgcatcgaggataaattacgc
cgccgtgatttattggtcgatgaagagtccttgtatcagttttatgataaaaaaatcccc
gatcatattgcgagccgcaaaacgtttgaagactggcgtgccgaagttgaaaaaaccgat
actaagtatctgttctttaccgatgaagacgtgcttaatagccaagcgccaacgacaggc
gatttcccagaagtgtggaaacttggcgatttaaagttgccactacgctatatttttgat
ccagcgagcgatgatgatggggtgaccatccgtgtgccacttgtcgcgctaccgcagctt
gatgcgattgagctgttatggggtgtacccggttggcgttatgagctggtattacagtta
ttaaaatcattaccaaaagacattcgtcgtcagattgtacctattcctgatactgccgat
agcttgtttgatgaattgcagcctgcgggtggacaggggttattaaaacagctttgccaa
gcacttaaccgccgtggcattatgtcagttactacagagcattttaatccgtctagtatt
gatcgttatttgcagccacaaatctgcgtggtcgatgataagaaccgtatcatcgaaaaa
ggacgcgatctgcaaacgctacagattcgccatgcttctcagacgcgccaagcggtgaat
gagcagcaaggcgcgcatacagaatttcctgagcactttgcctttagtaaaaaccatcat
agcgcaggtgtggttatgaagcagtttgctgctttggttgctgacgaggcaggtgaagcg
gtatctatccatcaatataccgatgttaatgcagcactgcaggcgcaccgtatcggggtg
ttaacgctaatcaaaagcagacttggctcaaagaaaaaacagctgaccagtcaagttgat
aacatatttaaactggcattcgcaccgcttggcgatatggaaaagcttaagactatcatt
attgatgcgactttagatgcaacactcgaagagcactatgtattgtttgatcatacggca
gacctacctgagagtgctaatgatgttgcggttggactcagtgaggagctaccctttact
cctgaagagtatagccaaacgctcgatgtgctactaagtaacttcttgctgattggtcaa
acggttataaaaacgctcaaaagcgtttatacccgctggcaacgtattcgccaaagcatg
ctaatgcttgatcgagagatatttggcgagtctattgaagatattgaagatcagttagca
gatttgcatttggctgattttgtttatcgtatggattatagccactggcagcagtatcca
cgctatctggaagcgctagagattcgtatcgaccgccttgagcacaatgtcgaagctgac
ctcgatggcgtctatgcccttgacttacatatggaaagacttgcaggacgtgctaatgat
aaagccatcagcgattaccgctggatggtcgaggagtaccgcattcaactgtttgctcag
ccgatgaaaacccgtatggcggtatcgcccaagcgtctaagtaagatatgggataaaatg
agttag
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