Psychrobacter cryohalolentis: Pcryo_1474
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Entry
Pcryo_1474 CDS
T00350
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcr
Psychrobacter cryohalolentis
Pathway
pcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcryo_1474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcr03019
]
Pcryo_1474
Enzymes [BR:
pcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pcryo_1474
Messenger RNA biogenesis [BR:
pcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pcryo_1474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABE75253
UniProt:
Q1QAQ0
LinkDB
All DBs
Position
complement(1813967..1815121)
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AA seq
384 aa
AA seq
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MSNFTTFTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFL
LTIMEALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGT
NYETQQHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKR
LVGRMPPNTDRQSLLFSATFNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTED
QKLEAVERIITDSTVEKVIIFANRKDQVKRLYHKLRQGHKIVMLSGDVIQQKREKYLQRF
KDGHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSE
DDAFNIPALEKHLDTKFKLEQWQP
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaactttacgacgtttacggatttgccactttcagcagcgaccttgcgtgcagta
agtgacttaggttttactgaattgacgccgattcaagcaaaaatactgccgcatacgctg
gcaaaccaagatgcgatcggacaggcgcagacgggtacgggcaagacggctacattttta
ttgaccattatggaggcgttacttaagcgtccgtttgctgctgatgaagaacgtcattta
ggtgagccacgtgctgtcgttatggcacctacccgtgagcttgctcagcaaatattcgat
gattgtatcgctttgaccaaatatacttctttgcatagcgtctgtattatgggtggtacc
aattatgaaacccagcagcatgagcttgagcgtcaatacgtcgatatcttgattgccaca
cctggtcgtttgattgatttaatgcacaaaggtatggtttatcttgatcgcgtagaagta
ttagtattagatgaagcagaccgcatgctcgatatggggtttatacctgatatcaaacgc
ttagtcggtcgcatgccacccaataccgaccgtcaaagtttattgttttctgctaccttt
aaccaagatgtgatgggtttggcttatcgctggttacatgagccagagtttgtcgaaatt
gagcctgagcataaaaccagtgagctggtagaccaacatttttatctcttaaccgaagat
cagaagctagaagcggttgagcgtattatcacggatagtacggtagagaaagtgattatt
tttgccaatcgtaaagaccaagtaaagcgcctatatcataagctgcgtcagggacataaa
attgtcatgttatcaggcgatgtgattcagcaaaaacgcgagaaatatctacagcgcttt
aaagacgggcatgcctctgttttggtcgcgaccgatgtagcagggcgcggtattcatgtt
gatgatgtcagtcatgtgattaattataccttaccagaccagccagatgactatgtacac
cgtatcggtcgtactgggcgcgctgggcaaaccggtattagtattagctttgtcagcgaa
gatgatgcctttaatataccagcattagagaagcatttggatacgaagtttaagcttgag
cagtggcagccttaa
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