Porphyromonas crevioricanis: NCTC12858_00042
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Entry
NCTC12858_00042 CDS
T05510
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC12858_00042 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcre03021
]
NCTC12858_00042 (rpoD)
Transcription machinery [BR:
pcre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC12858_00042 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
Put_DNA-bind_N
dCache_3
Motif
Other DBs
NCBI-ProteinID:
SQH72236
UniProt:
A0A0A2FG39
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All DBs
Position
1:complement(50700..51563)
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AA seq
287 aa
AA seq
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MRQLKISKSITNRESASLDKYLQEIGREELISVEEEVELAQAIRRGDRRALEKLTRANLR
FVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNQVGTLNKITKALQRFEQENERRPSSSELAKELDLPEDKITDTLKVSGRHI
SVDAPFVEGEDNSLLDVLVNDDTPNTDTSLMNESLAQEIDRALSTLTEREAEIVKLFFGI
GERQEMTLEEIGDTFGLTRERVRQIKEKAIRRLRQSNRCKLLKGYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagttaaagatatcgaagtccattaccaaccgtgagagtgcatctctggacaag
tatttgcaggaaataggccgtgaggagcttatttcagtggaagaagaggtggagttggct
caagcgatcagacgaggagatcgccgagctctcgaaaaactcaccagggccaatctgcgc
tttgtggtttccgtagccaagcagtatcagaatcaaggattgagcctgcccgacttgatc
aacgagggtaatctcgggttgatcaaagctgccgaaaaattcgatgagacgcgcgggttt
aagttcatatcctatgctgtgtggtggattcgtcagtccatattgcaggctttggccgag
cagtcgcgtattgtgcgcctgccattgaaccaggttggtacgctcaataagattaccaag
gctcttcaacgttttgagcaggagaatgaacgacgtccttcctcttccgagctggccaag
gaattagatttgcccgaggataaaattaccgatacgttgaaagtctccggccgccacatt
tctgtggatgctcctttcgtggagggagaagacaacagcttgcttgatgttttggtcaat
gatgatacgcccaatacggatacctctctgatgaatgagtccttggcgcaggagatagat
cgtgcgctctctacgcttaccgaacgtgaagccgaaatcgtaaaactgttctttggaatt
ggggaaaggcaggagatgacactcgaagagataggtgatacctttggtctgactcgtgag
cgtgtgcgtcaaatcaaggaaaaagcaattcgtagactgagacaaagtaaccgttgtaaa
ttactcaagggatatttgggttaa
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