| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
pcre Porphyromonas crevioricanis
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pcre00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12858_00233 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:pcre03021]
NCTC12858_00233 (rpoC)
03400 DNA repair and recombination proteins [BR:pcre03400]
NCTC12858_00233 (rpoC)
Enzymes [BR:pcre01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12858_00233 (rpoC)
Transcription machinery [BR:pcre03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12858_00233 (rpoC)
DNA repair and recombination proteins [BR:pcre03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12858_00233 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:complement(242623..246957)
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| AA seq |
1444 aa
MAFKKENKIKSNFSRITVSLASPEEILENSCGEVLKPETINYRTYKPERDGLFCERIFGP
VKDFECHCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHILLEVPVAHIWYFRSLPNKI
GYLLGLPTKTLDAIIYYEKYIVVQPGIAAHLLREEEEKPLSAMDTLTEEEYLNLLDEVLK
KDPTNQELPNTDPNKFIAKIGAEAVYDLLQRVNLDELSYELRYSANHGNSQQRKNEALKR
LQVVESFRSSAHINKPEWMIMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNR
LKRLIEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKGDNNRPLKSLSDSLKGKQGRF
RQNLLGKRVDYSARSVIVVGPELKMHECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAK
KIVDRKEPLIWDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLSCTAFN
ADFDGDQMAVHLPLGTEAVLEAQILMLASHNILNPANGAPITVPSQDMVLGLYYITKLRP
GAKGAGLTFYGPEEATIAYNEGKVDLHAPVKVLVEDRVDGALVTRMVETSVGRLMVNELV
PEEVGYINELLGKKALRDIIGLVIKICGVARTAQFLDDIKNLGYYMAFKGGLSFNLGDVI
IPQEKQKLIDEGYEKVAETMNNYSMGFITNNERYNQIIDTWTHINAKLSNVLIDHLAKDN
EGFNSVFMMMDSGARGSKEQIRQLSGMRGLMAKPQKSGVEGGQIIENPILSNFKEGLSVL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIISEEDCGTLRGLVTGELRKNEE
VVASLYDRILGRVSVHDVVHPNTGEILVHSGEEIREQQAQLIQDSPIETVEIRSVLTCES
KQGVCAKCYGRNLATNKMVQRGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNIATENSM
ISKFDAVLDFEELRIVDVEDSDKPYSVVVSRMTEMRQVDPNTGIVLATHNVPYGAKLYKQ
KGDSVKKGDVIFEWDPFNAVIVSESDGKLEFENFEENVTYKVESDDTTGLREKIVIESKD
KTKAPSVTVIDANGNPQRTYNLPLGAHVVKDSGTMVKVGETLVKIPRAIGKSGDITGGLP
RVTELFEARNPSNPAVVSEIDGEVTFGRIKRGNREITVTSKLGEVKKYLVPLSKQILVQS
NDFVRSGTPLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQM
MRKVEIMDPGDTRFLERQIVDKQEVMEENDRIWDKKIVEDAGDSQNFKPGQIVTLRKLRD
ENSMLKRKDLRPVVTRDAKPATSNQILQGITRAALQTTSFMSAASFQETTKVLNEAAING
KSDTLEGLKENVICGHLIPAGTSLRAYDKLIVMHKDDYEKVQAESKLLTTLPEKTEREAE
AVEA |
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| NT seq |
4335 nt +upstreamnt +downstreamnt
atggcttttaagaaagaaaataagataaagagcaatttctcccgtatcactgtgtctctt
gcttccccggaagagattttggagaactcgtgtggagaagttcttaagcccgaaacaatc
aattatcgtacctataagcctgagcgagatggattgttctgtgaacgtatcttcggaccg
gtaaaggatttcgagtgccattgtggtaaatacaagcgtattcgctatcgtggtattgtt
tgtgaccgttgtggtgtagaggtaaccgagaaaaaagtgcgcagagagcgcatggggcat
atcttgctagaggtgccggtggctcatatttggtatttccgttccttgcccaacaagatt
ggctatttgttgggattgccgactaagaccctggatgctattatctactatgagaagtac
attgtagtacaaccgggtatcgctgcccatctgcttcgtgaagaggaggaaaaacctctt
tcagcaatggatactctaacggaggaggaatatctcaatttgttggatgaagtcttgaaa
aaagaccccacaaatcaggagctacccaataccgacccgaataagtttattgccaaaata
ggggctgaggctgtttatgaccttttgcaaagggtgaacttggacgagttgtcttacgaa
ttgcgttacagtgcaaatcatggcaattcgcaacagcgcaagaatgaagctcttaaacgc
ttgcaggtagttgagagtttccgctcttcagcacatatcaataagcccgaatggatgatc
atgaaggtcattcctgtaattccaccggatctgagacctctggttccattggatggagga
cgctttgcaacttccgatttgaatgacctttatcgaagagttatcatacgtaacaatcgc
ctcaagaggctcatcgagataaaggccccggaggttattttgcgcaatgagaagcgtatg
cttcaggaagctgtagacagtctttttgataatagtcgcaagagcagtgccgtaaaaggg
gataacaatcgtcctttgaagtccctttctgatagcttgaagggcaagcaagggcgtttc
cgtcagaacttgctgggtaagcgtgttgactactctgcgcgttcggttatcgtggttggg
cccgagctgaagatgcatgaatgcggtctgccaaaggatatggctgcagagctgtataaa
ccgtttgtgatacgtaagctgatagagcgaggcattgtcaagacagtcaagagtgccaaa
aagattgtggatcgcaaagagccactgatttgggatattctggagaatgtcatgaaagga
catccggtgctgcttaaccgtgctcctactcttcaccgattgggtatacaggcttttcaa
cccaagatgattgagggtaaggccattcagttacatccattgtcttgtactgcttttaat
gcggacttcgatggagaccagatggcggtacacttgcctttgggtacggaggctgtgctt
gaggcccagattttgatgcttgcctctcataacatccttaacccggccaatggtgcccct
atcacagtgccttctcaggatatggtattggggctctattatatcaccaagctcagaccc
ggagccaaaggggccggcctcactttctacggacctgaagaggccacgatagcctacaat
gagggcaaagttgatttacatgctccggtgaaagtcctcgtggaagatcgagtagacggt
gctcttgtgactcgtatggtcgagacttctgttggccgtttgatggtgaatgagcttgtt
cccgaggaagttgggtacatcaatgaactgctgggtaagaaagctttgcgagatatcatt
ggtttagtaatcaagatctgtggtgtggcccgaacagctcagttcctggatgatatcaag
aaccttggttattacatggcattcaagggaggattgtctttcaatcttggagacgtgatt
attccacaggagaagcaaaagttgatcgatgaaggctatgaaaaagtggccgaaacgatg
aacaactactctatggggttcatcacaaacaatgagcgctacaaccagattatcgatact
tggacacatatcaatgctaagttgtctaatgtgctgatcgatcatctggccaaggataac
gaaggcttcaactcggtgttcatgatgatggactccggggcgcgtggttctaaggaacag
attcgtcagctatccggtatgcgcggcctgatggctaagcctcaaaagagtggtgtagaa
ggtgggcagattatcgagaacccgattctttcgaacttcaaggagggactatcggtattg
gaatactttatctctactcacggagcgcgtaaaggtttggcggatacagctcttaagaca
gctgacgccggttatctgacacgtcgtttggtcgatgtctctcatgatgtgattatatct
gaggaggattgcggtactcttcgtggattagtcactggagagctgcgtaagaacgaagag
gttgttgcttctctctacgatcgtatactcggtcgtgtatcggtgcatgatgttgtacat
ccgaataccggggaaatccttgttcattctggagaggaaattcgtgagcagcaggctcag
ctgattcaggattcgcccattgagaccgttgagattcgctctgtacttacttgtgaatct
aaacaaggagtttgtgccaagtgctatggtcgtaatttggctacaaacaagatggtgcag
cgaggagaagttgtcggcgtgattgctgctcagtctattggagagccaggtacacagctt
actcttcgtactttccacgttgggggtatcgcttctaatatcgctacggaaaacagcatg
atttctaagtttgatgctgtacttgattttgaggaactacgaatcgtggatgttgaagac
tctgataagccttattcagtggttgtgagtcgaatgacagagatgcgtcaggtggatccc
aatactggtattgtgttggcgacacacaatgttccctatggagctaagctctacaaacag
aagggcgatagtgtgaagaagggcgatgtgatatttgaatgggaccccttcaatgctgtt
attgtctctgagtctgatggtaaactggagtttgagaacttcgaggagaatgttacctac
aaagtggaatctgacgatacaacaggacttcgagagaagatcgttatcgaatcgaaggat
aaaacaaaagctccgtcagtaacggttatcgatgctaatggcaatcctcagcgcacttat
aaccttccgcttggtgcacacgtagtcaaagattctggcaccatggttaaagtaggggag
acattggtgaaaatcccacgagccataggcaagtcaggggacatcaccggaggtttgcct
cgtgtgacagagttatttgaagcacgtaatccaagcaacccggctgtcgtctctgagatc
gatggtgaggttacttttggtcgtattaagcgaggtaatcgtgagatcacggtgactagc
aaactcggagaggtgaagaaataccttgtgcctctatccaagcagattttggtgcagagt
aacgacttcgtgcgttccggtacccctctttctgatggtgccatcactccggctgatatt
ttggccatcaaaggtccgacggctgtacaagagtacatcgttaatgaagtgcaggatgtt
taccgtttgcagggtgtaaagatcaatgacaagcacttcgaggtgatcgttcgccagatg
atgcgtaaggtagagatcatggatccgggagatactcgtttcttggagcgccagatcgtg
gataagcaggaggttatggaagaaaatgaccgcatttgggataagaagattgttgaagat
gccggagactcccagaacttcaaaccggggcagatcgtaactttgcgcaaattgagagat
gaaaattcaatgctcaaacgcaaggatttgcgtccggtggtaaccagagatgctaagcca
gctacttctaaccaaatcctgcaaggtattactcgggctgcgttgcagacaaccagcttt
atgagtgctgcttctttccaggagacaaccaaggtgcttaatgaggctgcgatcaacgga
aagtccgatacgcttgaaggtctcaaagagaatgtgatctgcggtcatctcatacctgcc
ggaactagtctgcgcgcttacgacaagctgatcgtgatgcataaggatgattacgagaag
gtgcaagccgagagcaagttgcttactactcttcctgagaaaaccgagcgagaagcagag
gctgtagaggcttga |
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