Porphyromonas crevioricanis: NCTC12858_00889
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Entry
NCTC12858_00889 CDS
T05510
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12858_00889 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcre03019
]
NCTC12858_00889 (recQ_1)
03400 DNA repair and recombination proteins [BR:
pcre03400
]
NCTC12858_00889 (recQ_1)
Enzymes [BR:
pcre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12858_00889 (recQ_1)
Messenger RNA biogenesis [BR:
pcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12858_00889 (recQ_1)
DNA repair and recombination proteins [BR:
pcre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC12858_00889 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
HTH_40
ResIII
HHH
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
SQH73051
UniProt:
A0A0A2FM84
LinkDB
All DBs
Position
1:994669..996849
Genome browser
AA seq
726 aa
AA seq
DB search
MVDDLTLKLKEYFGFDTFKGNQEAIIRNVLEGKDTFVRMPTGGGKSLCYQLPALILPGTA
IVVSPLIALMKNQVDAIRYVSSDDGIAHFLNSSLTKVQIERVRQDIRAGITKLLYVAPES
LNKEENIAFLRTVHVSFYAVDEAHCISEWGHDFRPEYRRIRPIINEISPRPVIALTATAT
PKVQHDIQKNLGLNSPTIFKSSFNRPNLFYQVKPKNENVDREVVKFILSMPGKSGIVYCM
SRNKVTTFAQILQANGISALPYHAGMDPKERAENQDAFLEERADVIVATIAFGMGIDKPD
VRYVIHYDMPKSLEGYYQETGRAGRDGGEGICLAFYSKKDLAKLEKFMKGKPISEQEIGR
QLLIETAAYAESRVCRRKLLLHYFGEEYEKDNCGSCDNCLMPVKQVEAKELLVSVLEAVQ
ELKSKFKTDYVIKILRGENSAEVESFKHDQLESFGVCEKESEETLNSVIRQALIEGYLSK
DIENYGLLKETPKGKKYLKKPVSFQIPSEDEEEDSESAVPRTSGGGSGGAVDPVLFSMMK
DLRKKIGSRHKVPPYVVFQDVSMEAMATFYPVTMEELQKIPGVGAGKAKRYGQEFLDLIK
RHVEDNDIERPEDLRVKTLANKSKMKVAIVQQIDRKVALDDIAMSHGLEFDELLSEIEAI
VYSGTHLNIDYFIEEAMDPDHVSDIYDYFKESTSDSLEAAQEELGDEYSEDEIRLLRVKF
LSDLAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggtggacgacttaactcttaaactgaaagagtatttcggcttcgatacattcaagggt
aaccaagaagctatcatacgaaacgtattggaggggaaggatacctttgttcggatgcct
acgggaggaggcaagagcctttgctaccaactgccggctcttatcttgccgggtacggcc
atcgtagtatctcccctaattgccttgatgaagaatcaagtcgatgctatacgttatgtg
agtagtgatgacggtatagcacattttctaaactcttctcttaccaaggtacagatagag
cgggtgcggcaagacatccgagccggcattaccaagctgttgtatgtagcccccgaatcg
ctcaataaggaagagaatatagcctttctgcggactgtgcatgtctctttttatgcagtc
gatgaggctcactgtatttcggaatgggggcatgactttagaccagagtacaggcgtatt
cggcctattatcaacgaaatatctcctcgccctgtgattgctctcacggctacggccacc
cccaaggtgcagcacgatatacagaagaatttgggccttaattctccgacgatattcaag
agttcattcaaccgcccgaacttattttatcaggtaaaacccaagaatgaaaatgtagat
cgggaagtggtcaaatttatcctctccatgcccgggaaaagtggaattgtgtattgcatg
agtaggaataaggttactacctttgcccaaattttgcaggccaatgggattagcgctctc
ccttaccatgcgggtatggatcccaaagagagggcggaaaaccaggatgcttttctggaa
gagcgtgccgatgtgattgtagcgacaattgctttcggtatgggtatcgataagccggac
gtgcgctacgtgattcactacgatatgcctaagagtctggagggatactatcaggaaacc
ggcagagccgggcgagatgggggtgagggtatttgtctggctttctatagtaagaaagat
cttgccaagctggagaaattcatgaaaggtaaacccatcagcgagcaggagattggcagg
caattattgattgagacggcagcttatgccgaatcgagagtttgtcgtcgcaagttgctc
ttgcactacttcggagaggagtacgagaaagataactgcggcagttgtgataattgtttg
atgccggtaaaacaggtggaagcaaaggagttattagtgagcgtgttggaggccgtccag
gaactcaaaagcaagttcaaaacggattacgtaatcaagatacttcgcggagaaaactct
gccgaggtggaatcgtttaagcatgatcagctggaaagcttcggtgtgtgtgagaaagaa
tccgaagagactctcaatagtgtgatcagacaagccctgatcgaaggatatttaagtaag
gatatagagaattatggcctgctcaaagagactccgaagggtaagaaatatctcaagaaa
ccggttagcttccagatccccagtgaggatgaagaggaagacagcgagagtgctgtgcca
cgtacttcgggtggcggatcgggtggtgcggtagacccggtgctattctccatgatgaaa
gatctgcgcaagaagatcggatctcgccacaaagtgcccccctatgttgtctttcaggat
gtcagtatggaggctatggctacattctatcctgtgaccatggaggagctgcagaagatc
ccgggagtgggagccggcaaagccaagagatacgggcaggaatttttggatttgattaag
cggcacgttgaagataatgacatagaacgtcctgaagaccttcgagtgaaaacgctggcc
aataagtcgaagatgaaagttgctattgtgcagcagatagaccgtaaggtggctttggac
gatatagccatgagccacggattggagttcgatgaattgctctccgagatagaggcgatt
gtctactctggtacgcacctcaacatcgactactttatcgaagaggctatggaccccgac
catgtcagtgacatttatgactacttcaaagaatcgacttcggattctctcgaagccgct
caggaagagttgggtgatgaatatagcgaggacgaaatacgactactgagggtaaagttc
ctctccgatttggccaattga
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