Pelecanus crispus (Dalmatian pelican): 104024462 Help Entry 104024462         CDS       T08340                                  Symbol XRN1 Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism pcri  Pelecanus crispus (Dalmatian pelican) Pathway pcri03008   Ribosome biogenesis in eukaryotes pcri03018   RNA degradation Brite KEGG Orthology (KO) [BR:pcri00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     104024462 (XRN1)   09123 Folding, sorting and degradation    03018 RNA degradation     104024462 (XRN1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pcri03019]     104024462 (XRN1)    03009 Ribosome biogenesis [BR:pcri03009]     104024462 (XRN1)    03016 Transfer RNA biogenesis [BR:pcri03016]     104024462 (XRN1)    03036 Chromosome and associated proteins [BR:pcri03036]     104024462 (XRN1) Messenger RNA biogenesis [BR:pcri03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      104024462 (XRN1)   mRNA degradation factors    5'-3' decay     5' exonucleases      104024462 (XRN1) Ribosome biogenesis [BR:pcri03009]  Eukaryotic type   Pre-60S particles    RNases     104024462 (XRN1) Transfer RNA biogenesis [BR:pcri03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     104024462 (XRN1) Chromosome and associated proteins [BR:pcri03036]  Eukaryotic type   Gene silencing    piRNA pathway     104024462 (XRN1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  XRN_M XRN_N XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer Motif Other DBs NCBI-GeneID:  104024462 NCBI-ProteinID:  XP_009482829 LinkDB All DBs Position Unknown AA seq 1735 aa AA seqDB search MNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMN QQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKI STDKSWQGVTVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLT SHEAHFALLREEVRFGGKKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDI ERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKR FEKYLTRLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENS ICLAALEKNEGEVVTPKTVLEDEPEDDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQA ECYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIRNIGELKIQFELGKPFMPFEQLLA VLPAASKDLLPKCYQHLMISQDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQ AMESCNKCLKEEEKRRNTHSACLMYWYDKDAEFQYMSPWPEKFPAIERCHTRYKTIPLDA WHVEITHNKITKINKSALYFCGFPTLKHIKHKFYLRKSGVQVFQQSSHGENMMLEIIADE NSKEQMVENVASLVLGRRVFVNWPHLEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPP TKVAYIGDKEQSMWLKEVQGISEHYQRRKGIIIHETSIVVYAQLLTGNRYQLNQNGEVYL EKQWSKQLLPFVYQTVVKDIKAFDSRFSNIKTLDDLFPPGSTAFMLGSPYYGCMGEVQDS HDVITEGRIRVVFNIPCEPQLDPLIQNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIF IGRGSKKNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPE LFNYIAKNSQEDIFYEDDIWPGEDENGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAI VEKIEEEIEKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENF SVPVGLRGTIIGIKGASRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGS RSEMGNQKLTAIVKPQPAVNNYNSYASDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQ HYNLRAENQGNSNSPQKGSFLSGNQKNKAQSKPDDEFCSIWQSLQSSGKSHHVQQTMHEK GAVLPQEIKLGTGNQFYKPGFNDSSFKGQQRKQEPYKKFKEDSKVTRGESQPHNKISNKQ NFAGVNKYNVKLLKRNESPNTPVIQKAAVDGPCTGGKKDNELESLLASLKISKENEVQTY SKEARATNEEHLSPQSFAMKGTQMLKEILKIDGSDLETRNEVKSQVNDVPAPPSRQDCHG AALQYRQTKKMAPYMNKPHSTGGPQNAPALETGGHPFPCPQPALSTVSELSRICSLVGMS QPDFSFLKTPQTMTVCHIKLSNGLLVHGPQCHSEAEAKEKAALFALQRLSSIGVNFPLPP PPPVFPNYQPLGVPVPPGSIPPVFAQHPANIMPPSSHMFGPVSWGTPVPKHYYPGSYAGN VSLAGTVPVGSHNQFIPLQVTKKRAASKKNFELKEFQSSPQAAPLKNEQPVSSDHIQQDS SSAPLKSPQAAQSTVSFQDNVATPSVPHNKSTPNTSSKRKPRKLAVNFGAPKSSE NT seq 5208 nt NT seq  +upstreamnt  +downstreamnt atgaatggcattatacatcagtgttcacatccaaatgatgatgatgttcacttcagaatc tcagaagataagatctttgctgatatttttcactatttggaagtactatttcgcattatt aaaccaaggaaggttttcttcatggcagttgatggagtagctccaagagcaaaaatgaat cagcagcgtgggagacgttttagatcagcaaaagaggcagaggacaaaataaaaaaggca ttagaaaagggagaaactctccctacagaagccagatttgactccaactgtattacacca ggaactgaattcatggccagattgcatgaacatcttaagtattttgtaaatatgaagatt tccacagacaaatcctggcaaggagtaacagtctacttatcaggccatgagactccgggg gaaggtgagcataaaattatggagttcatcagatcagaaaaagcaaagccccatcacgat ccaaacacaagacactgtctctatggcttagatgctgacttgattatgctgggattaaca agtcacgaggcacactttgcgctcttaagagaagaagtcagatttggtggtaaaaaatct caaagagcatgtgcaccagaggaaaccacgtttcatttactgcacttatcactgatgaga gaatatattgattatgaattttcaccagtaaaagacaagatttcctttgaatatgatatt gaaaggataatagatgattggatcttaatgggtttccttgtaggaaatgattttattcct catctacctcatttacacattaatcatgatgcactgccgctactttatagaacatacatg gctatcttgccagaactgggaggttacataaatgaaaacgggcatctgaatttaaaacgc tttgagaaatatctcacaagattgtcagattttgatcgtgaacacttcagtgaagtcttt gtagacctaaaatggtttgaaagtaaagtaggcaataaatacctcaacgaggcagctggt attgcagcagaggaagccagaaaaaataaacaaaagaaacaaaaggctcaggaaaattct atatgtttggctgctttagaaaaaaatgaaggtgaagttgtgacccctaaaactgtgttg gaagatgaaccagaagatgatgatctgtttgaaacggagtttaggcaatacaaaagaaca tactacatgactaaaatgggcgtagaagtagtttctgatgacttcttggctgatcaagct gaatgttatgtccaggcaatacaatggattttgcattattattaccatggagttcagtca tggagctggtattatccttatcattatgcaccttatctgtcggatattcgcaacattggc gaactcaaaatccaatttgaactgggaaaacctttcatgccatttgaacagcttcttgct gtacttccagcagctagcaaagatctgctacctaaatgctaccagcatttgatgatcagt caagactctcctattatagaatattatccaccggatttcaaaactgacctaaatggcaaa cagcaagaatgggaagcggtagtattaatcccgtttattgatgagaaacgactgctgcag gccatggaatcctgtaataagtgcctaaaagaagaggagaaacgaagaaatactcacagt gcttgcttaatgtactggtatgacaaagatgcagagttccagtacatgtcaccatggcca gagaaattccctgcgatagaaagatgtcatacaaggtataaaacaatacctttggatgct tggcacgtagaaataacccacaataagataactaaaatcaacaagagtgcattatatttt tgtggatttcctactttaaagcacattaaacataagttctatcttagaaaaagtggtgta caggtgtttcagcaaagcagccatggagagaacatgatgttagaaatcatagctgatgag aactcaaaagaacagatggtagaaaatgttgccagtttggtacttggaaggcgtgttttt gttaactggccacaccttgaagaagccagagttgttgctgtgtcagatggagaaactaag ttttatttggaagaaccacatggcacacagaagctttatatgggaaatgcagtgccccca actaaagtggcatacattggagataaggaacaaagcatgtggttaaaagaagttcaaggc atttcagagcactaccagagaagaaaaggaataattattcatgaaacatcaatagttgta tatgctcagttactcactggtaatagatatcaactaaaccaaaatggagaagtttatttg gagaaacagtggtcaaaacaacttcttccttttgtttaccaaactgttgtcaaggatatc aaagcctttgactctcgtttttcaaacatcaaaactttggatgatttgtttcctcctgga agtacagcctttatgctgggatctccttactatggctgcatgggagaagttcaagattca catgacgtgatcacagaaggtagaattcgtgtggttttcaatattccatgtgaaccccag cttgatcctttaatacagaaccagcataaatattctgtgaaatacaatcctgcatatatt ttggccagccgtcttggagtaagtggatatcttgtctccagatttacagggagcatcttt attggaagaggatcaaagaaaaatcctcatggagatcacaaagcaaatgtggggctaaac ctgaagttcaataagaaaaatgaagaagttcctggctatactaagaaagttggaaatgaa tggatgtattcttctgcagtagaacaactacttgctgagtatttagaaagggtccctgaa ctatttaattatatagccaagaatagccaggaagatatcttctatgaagatgacatttgg cctggagaagatgagaatggagctgagaaagttcaagaaattgttgcctggttaaaggca catcctgtgtctgctttgtctcgctcatcctgcgacttgcaaattttggatgcagccatt gttgagaaaattgaagaagaaatagagaaatgcaagcagagaaagagcaacaagaaggtg cgagtaactgtgaaaccccatttgctgtacagaccattagaacaacagaatggggttgtt ccagatcgagatgcagagtataggctgtttgaccgtgttgtcaatgtgagagagaacttt tccgttccagttggtcttcgaggtaccattataggaattaaaggagccagtagagaaaca gatgtgctctttgaagttttgtttgatgaagaattccttggaggccttactataaggtgc tcgcctgcgagaggttatcgtctgccatcaagtgccttaattaacctgtctcatggtagt cggtcagaaatgggaaatcaaaaactgacggccatagttaaacctcaaccagctgtgaat aactacaattcatatgcatctgatctgtcatctgtatgctcacaaaaagtgcatctggga ggcctcaaccattctcctcgctctctttttgttcctactcaacaactgaatggaagacag cattataatctcagggctgaaaatcagggcaactctaactcaccccagaaaggatcattt ctgagtggcaatcagaaaaataaagcacagagtaagccagatgatgaattctgcagtata tggcaatcattgcagagttctgggaagtctcaccacgttcagcaaaccatgcatgagaag ggtgcagttctacctcaggaaatcaagctgggaactggcaatcagttctataagccagga ttcaatgacagcagctttaaaggtcagcaaagaaaacaggagccatataaaaaatttaaa gaagattccaaagttacaagaggtgaaagtcagccacataataaaatatcaaacaaacag aattttgcaggtgtgaataagtacaatgtcaaacttttgaagaggaatgaaagtcccaac actcctgtaattcagaaagctgcagttgatggtccctgcacaggtggaaagaaggacaat gaacttgaaagccttctagcttctttgaaaatttccaaagaaaatgaagtgcagacttat tccaaggaagcaagagctacaaatgaagaacatctgtcaccacagtcatttgctatgaaa ggaacacagatgctcaaagagattttgaagatagatggctctgacctggaaacaaggaat gaagtgaaatcccaagttaatgatgttcctgctccccctagtagacaggattgccatgga gctgccttgcaatatagacaaacaaaaaaaatggctccttatatgaacaagcctcacagc actggaggccctcagaacgcaccagcactggaaactggaggtcacccttttccttgtcca cagcctgcactgtctactgtttctgaactttctcgtatttgttctcttgttggaatgtcg caaccagatttctctttcctaaaaacaccacagaccatgacagtttgtcacataaaatta tcaaatggattgttggttcatggaccacagtgtcattctgaagctgaagcaaaggagaaa gctgcgctttttgctttacagcgtttgagttctataggagtaaacttccctttgcctccg cctccaccagtgtttccaaattaccaaccactgggagttcctgtaccacctggatctatt cctccagtatttgcacaacaccctgctaatataatgcctccatcatctcacatgtttggt ccggtgtcctggggaactccagtgcctaaacattattatcctggctcctatgcaggaaat gtgtctcttgcaggaactgtaccagttggttctcacaaccagtttatacctctgcaggta actaaaaaaagggctgctagcaagaaaaactttgagctcaaggagtttcagagttcccct caagctgcaccactaaagaatgaacagccagtgtcttctgaccacattcagcaagatagt tcttcagctcctttaaaatctcctcaagctgctcaatccactgtttcatttcaagacaat gtggctactccaagcgttcctcataacaaatcaacaccaaacacttccagcaagcgaaag ccgagaaagctggctgtcaattttggcgcaccaaaatcttcagaataa

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