Pelecanus crispus (Dalmatian pelican): 104027206
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Entry
104027206 CDS
T08340
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104027206 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcri03019
]
104027206 (PNLDC1)
Enzymes [BR:
pcri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104027206 (PNLDC1)
Messenger RNA biogenesis [BR:
pcri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104027206 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF6078
RNA_bind
Motif
Other DBs
NCBI-GeneID:
104027206
NCBI-ProteinID:
XP_009476149
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
LAIFSNENSNKYVVHSYNFFLFPSTLGVTDVEFTLSASSIQFLSHYGFDYNKFLKDGIPY
MNEVQEKILSQRLLAGSWKVSSALDRDVLKKAIDEVTCWLAAAEEEETMILQDLSGYQMF
EVQLVLRQALQNIWTQPVGDKKVMVKKVRPQHRRLLENSPCDYCQKELILMSARGFTNLF
QALVKAKKPLVGHNMLLDLMHLHDKFYKPLPESYEEFKRNIHNLFPVLIDTKTVTKSVWK
KCPFPRVTNLLEVYAVLCSSNLNPKDPTCPVIALASDCSRYAEKKSPHEAGYDAFLCGSV
LLKSAHLLLYRSTDDAVEADPSFSQYLTVLAKYLNKVNFIRGGVSSINFSGEDTPCQHPP
LLVVHVRGWPGLNERQIYQEFKALCRFDVRWLSKNQFILLSNKFKHVRRVLQDYKHHPHL
RVSVYRHWRHSPQVNCLLQVSGIVALWSLLAFVLGGVPCCSF
NT seq
1391 nt
NT seq
+upstream
nt +downstream
nt
ggctggcaatattctcaaatgaaaattcaaacaagtatgtggtgcattcatacaactttt
ttctctttccatcaacattgggagttacggatgttgaattcaccctctctgcatctagca
ttcagttcctgtctcattatggctttgactataataagttcctcaaagatggaatccctt
acatgaatgaggtacaggagaagatccttagccagcgtctcttagcgggcagctggaaag
tcagcagtgccctggacagggatgtgctgaagaaggctattgatgaagtgacctgttggc
tagctgcagcagaggaagaggagactatgattctgcaggatctgagtggctatcagatgt
ttgaagttcagctggttctgagacaggctctccaaaacatttggacacagcctgttggag
acaagaaggtaatggtgaaaaaagtgaggccacagcatcgtcggcttctggagaactctc
cttgtgactactgccagaaggagttaattctcatgtctgcccggggcttcaccaacctct
tccaggcacttgttaaagccaagaagcccctggtgggacacaacatgcttctggacctta
tgcatcttcacgacaagttctacaagccccttccagaaagctatgaggagtttaaaagga
acattcacaacctgtttcctgtcctcatagacaccaagactgtaacaaaatccgtctgga
agaaatgtccgtttcctcgagtaactaatcttttggaggtgtatgcagttttgtgcagca
gcaacctaaatcccaaagatccaacgtgcccggtgatagctcttgcaagtgactgctcaa
gatatgctgagaagaaatctcctcacgaggcaggttatgatgcatttctctgtggttcag
tccttctgaagtcagctcatttgctactgtacagatccacagatgatgcagtggaggctg
atccttctttctctcagtatctcaccgtgttagccaagtatctgaacaaagtgaatttca
tccgaggtggtgtttcaagcattaacttttctggagaagatactccctgccaacatcccc
ctctcttggttgttcatgtccgaggctggccagggctgaatgaaaggcagatttaccaag
agtttaaagctctttgtcgctttgatgtcagatggctttcaaagaaccagttcattctgc
tctccaataaatttaagcacgtcaggcgtgtcctgcaagattataagcatcaccctcatc
tgcgggtttcggtctatcgccactggaggcactcgccacaagtgaattgcctgctgcaag
tctctggtattgtggcactgtggtctctcttggcctttgtactcggaggagttccttgct
gttcattctaa
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