Pelecanus crispus (Dalmatian pelican): 104027329
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Entry
104027329 CDS
T08340
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcri03016
]
104027329 (RTCB)
Enzymes [BR:
pcri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104027329 (RTCB)
Transfer RNA biogenesis [BR:
pcri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104027329 (RTCB)
Prokaryotic type
tRNA splicing ligases
104027329 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104027329
NCBI-ProteinID:
XP_009476327
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
AGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGF
DINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIY
NEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARI
ASAEGQDYLKGMAAAXXXXXXXXXXYAWVNLSSMTFLTRQAFAKVFNTTPDDLDMHVIYD
VSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSY
VLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEE
APESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1370 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtggctttctgcctgctatgaaacagattgggaatgtggctgcattacctggca
ttgttcatagatcgataggtcttccagatgtccattctggctatgggtttgccattggca
acatggctgcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggat
ttgacatcaactgtggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagc
ctgtgaaggagcagcttgcccaggctatgtttgaccacattcctgttggtgtcggctcca
aaggtgtcatccccatgaacgccaaggatttggaagaggcgctagagatgggtgtggact
ggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
gaatgctgcaggctgaccccaacaaggtctcctcaagagcaaagaagaggggcctgcctc
agctggggaccctgggagccggaaaccattacgccgagatccaggttgtggatgatattt
acaacgaatatgctgccaggaagatgggcattgaccacaaagggcaggtgtgcgtgatga
tccacagtggcagcagaggcctgggccaccaagttgccacagatgcattggtggctatgg
aaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccagga
ttgcctctgcagagggacaggactacttgaagggaatggcagctgctnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnctatgcgtgggtcaacctctcttctatgacttttctaacaagac
aggcctttgccaaagtctttaacacaaccccagatgaccttgatatgcatgttatctatg
atgtgtctcacaacattgccaaagtggagcaacatgtagtggatggaaaggagcggactc
tgctggtgcacagaaagggatcaaccagggccttccctcctcaccatcctcttatcgctg
ttgattatcaactgactggacagcctgttttgatcggcggcactatgggcacctgtagct
atgttcttactggcacagagcaaggcatgactgagaccttcggaactacttgccatggag
ctggtcgtgcactgtctcgagccaaatctcgacgtaacttggacttccaggatgtattgg
acaagctggctgacatgggcattgccatccgtgttgcttctcccaaactggtcatggaag
aagcaccagagtcttataagaacgtgacagatgtggttaacacctgccatgcagctggca
tcagcaagaaagccattaaactgaggcctattgctgttataaaaggctag
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