Pelecanus crispus (Dalmatian pelican): 104032130
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Entry
104032130 CDS
T08340
Symbol
VPS39
Name
(RefSeq) LOW QUALITY PROTEIN: vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri04140
Autophagy - animal
pcri04148
Efferocytosis
pcri05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104032130 (VPS39)
04148 Efferocytosis
104032130 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104032130 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcri04131
]
104032130 (VPS39)
Membrane trafficking [BR:
pcri04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104032130 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
104032130
NCBI-ProteinID:
XP_009482647
LinkDB
All DBs
Position
Unknown
AA seq
870 aa
AA seq
DB search
EWLLVGTKQGHLLLYRIKKDIVPGEVMSSESVCCNRFEVTLEKSNKNFSKKIQQIHVVSQ
FKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQQSDTGEEVLRMCVAVRKKLQ
LYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSIKEXXXXXXX
XXXFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPIAMEHQPPY
IIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSIATQIQ
QLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAKLGTDP
THVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKLNDSDH
QSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVL
KKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLVFS
YSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHIIHVWEETGA
DFHNCLIQLYCEKVQGLMKEYLSSFPPDKTPVPAGEEGGDLGDYRKKLLLFLEKSSWYEP
SRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHKHYDRNKDGNKD
VYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLLPANTQ
ISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCTVCK
KKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2615 nt
NT seq
+upstream
nt +downstream
nt
aggaatggctccttgttggtaccaaacaagggcatcttctgctttacaggatcaagaaag
atatagtgccaggagaggttatgtcatcagaaagtgtctgttgcaataggtttgaagtga
cactagagaaatccaacaagaacttctcaaaaaagattcagcagattcatgttgtttctc
agtttaaaattctggtcagtctattagaaaataacatttatgtccatgacctgttgacat
ttcaacaaatcacgacagtttccaaggcaaaaggtgcatctctcttcacttgtgatcttc
agcagtcagatacaggagaagaggtgctcagaatgtgtgtggcagtgcggaagaagctac
aactttatttttggaaggacagagagttccatgaactacagggggacttcagtgtacctg
atgtaccgaaatctatggcctggtgcgaaaactccatctgtgtaggcttcaagagggact
attatctgattcgggtggatggaaaaggatccatcaaagaannnnnnnnnnnnnnnnnnn
nnnnnnnnnnntttcccacagggaagcagctggaaccattggtagctcctgtagcagatg
gaaaagttgcagttggccaagatgatctaacagttgtgctcaatgaagaagggatctgta
cacagaaatgtgccttgaattggacagatattcctatagccatggaacaccagcctccct
atatcattgctgttctgccaaggtatgtggagatccgcacttttgaaccccggctgctgg
tacagagtatcgagctgcagagaccacgcttcatcacctctggaggcacaaatattatat
atgtggcaagtaatcactttgtttggcggctcattccagtgtccatagccacacagatcc
agcagcttctgcaggacaagcagtttgagttggctttgcagttggcagaaatgaaagatg
attcagatagtgagaagcgacaacaaattcaccacataaagaacctctttgccttcaacc
tcttctgccagaagcgctttgatgaatccatgcaagtttttgccaagcttggtacagatc
ccactcatgtgatgggtctgtatcctgacctcctgcccacagattacaggaaacagctac
agtatcccaaccccctgccagggctctctggggcagagctggagaaggcacatttagctc
tgatagactacctaactcaaaaaagaagtcagctagtgaagaagctaaatgattctgacc
atcagtccagtacctcaccgctcatggaaggaacacccacgatcaaatccaaaaagaagc
tgctacaaatcattgataccaccctgttaaagtgttacctccatacaaatgtagcactgg
tagcaccattgctacgtctggagaacaatcactgccatattgaggagagtgagcatgtac
taaagaaggcacacaaatatagcgagctgataatactgtatgagaagaaaggtctgcatg
agaaagcattacaggtactggtggatcagtcaaagaaagccaactcaccgttgaagggtc
atgagaggacagtgcaatatttgcagcatttgggaacagagaacttgcatttggtatttt
cctactctgtctgggtgctaagagattttcctgaagatggactgaagatatttacagaag
acctccctgaagtggaagctttgccacgagacaaagtgctcagtttcttgatagaaaatt
ttaaaagcttgactattccttatctggaacacatcattcatgtctgggaagaaaccggtg
cagactttcacaactgtctgatccagctgtactgtgagaaagtgcaaggcttgatgaaag
aatatctcagttctttccctccagataaaactccagtgcctgctggggaggaaggaggag
acttgggggattaccggaaaaagcttctactttttctggagaagtctagctggtatgaac
ctagtcgactaattagtgacttcccctttgatggtctcctagaagaacgtgctctgctct
tgggtcgtatggggaagcatgagcaagctctatttatttatgttcatattttgaaggaca
ccaacatggctgaaaactactgccataaacattatgacagaaacaaagatggcaacaaag
atgtctatctgtcgctgctccggatgtatctctccccacctagtgttcattgcctgggac
caatcaagatggaagtgctggagcctcaagccaatctgcaggctgctctgcaggttttgg
aactacatcacagcaaactggataccaccaaggcgataaatctactcccagcaaatacac
agattagtgagattcggatcttcttagagaaagtccttgaagaaaatgcccagaagaaaa
gatttaatcaagtactcaagaatcttctccatgctgagtttctgagggtccaggaggagc
ggatcttgcatcagcaagtgaagtgcattattacagaggagaaggtgtgcactgtatgta
aaaagaagataggtaacagtgcatttgctcgataccctaatgcaatagttgtgcattatt
tctgctccaaagaagtcaacacattggacacctga
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