Pelecanus crispus (Dalmatian pelican): 104033166
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Entry
104033166 CDS
T08340
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcri03019
]
104033166 (DDX60)
Enzymes [BR:
pcri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104033166 (DDX60)
Messenger RNA biogenesis [BR:
pcri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104033166 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
TAtT
Bacillus_HBL
Motif
Other DBs
NCBI-GeneID:
104033166
NCBI-ProteinID:
XP_009484002
LinkDB
All DBs
Position
Unknown
AA seq
1828 aa
AA seq
DB search
MDSAEDRFKKVIHNDANENASDDDMESHCSDSEKIGFIPTKKHKESGSANDSDDEDETSD
KAEAAVMQMLKKEEDREKEAKDPDYSNAYSVSAIEEVTQQASQTEVKDFRVLQHERDSQS
PEIRKHLEFLKKLRLHIWESLSRAQYVSLLKDFVESEFFVIDGDSLLLMFLDEKTQYLNF
FYQVECFLQDFTEKGAKYVIVFFKDAEQMYFPYPHFLFLRTALIEHLRHNTGTTVHTEFS
NCLSFKWDIFLKKSYPYFIIVSDIGLTSLQTDYLSILITHSLSKKINVVLASGQEYDILR
VYGYHVQSVYKHRSFFKKYKPDLRYACENLAKYKEPFMCLYEHLKLSLKSIQKEVRQTVC
LLKQLWPEGSDIRRVVCVLAWAVGLKIYSNLLENADTSVRAKTATVRIQRSKPLSLEEAA
DLCRMQCLTVAFLLHMPLSQRAQIRIMKSCWTKQVLPLIKMQQLCTHFALTQLNDTNDWK
LDLTYLPDLNDDSLLRNLAYYYEAEYTEGLESKKELGKEVENEYQHLWDTLTKLAVKYSF
GDAFPIRKTSQLFLEQQQTLFRGYKEEIPNIGLISVKSDLVEDYAGDVLKNLPVLESNDP
AVTSLVKYKEFDELRHWHSGRPLTEEYERVRCNADAKSKDPEERRQIQKLQTFRHFYGST
LEDSTSKLIVQQEDVSRNANAAVKKTQKPHKSKAERIAEENNRRLKTKEEKKEQEQWKAL
CIPTEKEIKANMTVGINKMEKFLKTLKSKSVKFSVEMTALSACLAVWKEHCREQGDKPKD
LSKAVQVMRRIHILLEKYQDLLEKPHLQKLTRYLRLLGFENLACSLSGQQKEGRLHNDQN
VSKYAIEEGPARFQLQYMDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESAVIVA
PTSSGKTYASYYCMEKVLKTSNDGVVVYVAPTKALVNQVVGTIYSRFTKKLPDGLVVCGV
FTRDYRNDVMNCQILVTVPQCLEILMLSPRCQKWTKQIQYVIFDEVHCLGGEIGAEVWEH
LLVTIRCPFLALSATVSNPEHLTEWLQSVKRYWQHAEKTIEGSSANSEKNFTRKCKVKSK
VQEQKKSYRVRLVLYEERYNDLEKYVCSLKGSDFIIEHFHPCAALTVNHIETYGIPSDLS
LSPRESIQLYDTMVKVWQKWQRAQELDPEEFVSFKNKVVIKKADVRKYEQELKKELSKWI
ELGQRQKVNELLEHLKPKPVDCSEQEKWKHFANFVDKLHEMDKLPAIFFIFNVDSVECAA
KNVFLNLLRKQRSEQDPNTEREKERLRDELRKVTKTLIKLNSRDTKKLSSSKMESMVCLS
TTKQQLEKRLKKLTAIPSMYTYTDPKAVDEDTLRKIFHRLRFERRGYLQQMMALRGIGYH
HASMAAKERQVVEMLFRLGYIKVVTATSTLALGINMPCKSVVFAEDSVFLDALNYRQMSG
RAGRRGQDMIGNVFFYDIPLPKVERLIKSNVPQLKGQFPLTVSLILRLMLLAAKADDKAD
AKAKALSVLKHSLMAFRKERYAEILKIYFMFSLQFLIKEGYLDQEGNPIGFAGLVTHLYY
HEPSNFVLVSFLVKGLFHKLCQPIKGSTVFSEDVLEKLVLILANLFGRKYLPACSMKYKR
SFCQSKVFLEDLPEDFADAVNEYNAKVEENFAHFLLTTAKLADIEQEYRLPLSKTDFTSK
NWHGSELASYLMDNTKSVSAISPFACLSGVVDNDLFHGEIINKAVLRSLGINVTNCPLLY
LNKYDNQGRKRPLNAYALDFYKHGCLIALTTDNWLTEGDAYYALKDFSLLIKSIGTSLSE
LCDDPNDNVLLAFQQLGEIYEEKLKCVT
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggattctgcagaagatcgtttcaagaaagtcattcataatgatgcaaatgagaatgct
agcgatgatgatatggaaagtcattgtagtgacagtgagaaaataggcttcattccaaca
aagaaacataaagagagtgggagtgcaaatgacagtgatgacgaggatgagaccagtgac
aaagctgaagcagctgttatgcagatgcttaaaaaagaggaagacagagaaaaagaagcc
aaagacccagattacagtaacgcttatagtgtctcagccattgaagaagtgacacagcag
gcatcacaaactgaagtcaaggatttcagagttctccagcatgaacgtgattcccaaagc
cctgaaataagaaaacatcttgaatttctgaagaagttgaggctacacatttgggaatcc
ttatcaagagctcagtatgtcagtctgctaaaagactttgttgagtctgaattctttgtg
atagatggggattccttactacttatgtttttagatgagaaaacacaatatctaaacttc
ttctaccaagttgaatgcttcctacaggatttcactgaaaaaggtgcaaaatacgtcatt
gtttttttcaaggatgcagaacagatgtactttccgtatcctcattttcttttcttacgt
actgctttaatagaacacctgaggcataacacaggcaccaccgttcatacagaattttcc
aattgtttatcattcaaatgggatattttcctgaagaaaagctatccttacttcatcatt
gtatctgacataggactgacctctctccaaacagactatttatctattttaattactcat
tcactgtcaaagaaaatcaacgttgtgcttgcttcaggacaggagtatgatattcttaga
gtttacggatatcatgttcagagtgtgtataaacatagatcattttttaaaaagtataaa
ccagatctgcgatatgcctgtgaaaacctagctaagtacaaagaaccattcatgtgtcta
tatgaacatctcaagctgagcctgaaaagcatacagaaagaggttcgccagactgtctgt
ctcctgaaacaactgtggcctgaaggatctgacattcggcgtgtggtctgtgttcttgct
tgggccgtgggattaaaaatatacagcaacctgttggaaaatgcagatacttccgtgaga
gcaaagacagcaaccgtaagaattcaaagaagtaaacccctatctctggaagaagcagct
gacctctgtagaatgcaatgtcttacagtggctttccttcttcatatgcctctttcacag
agagctcagattaggatcatgaaatcctgctggactaagcaagttttacccttaataaaa
atgcaacagttgtgtacgcattttgctctgacacagctaaatgatacaaatgattggaaa
ttggatttaacttacctgcctgacttaaatgatgattcactgctcagaaatcttgcatat
tactatgaggctgagtacactgaaggattagagtccaaaaaggaattgggaaaagaagtg
gagaatgaataccaacatttatgggacacactaacaaaattggctgtgaaatacagtttt
ggagatgctttcccaatacgaaagacctcccagctctttcttgaacaacaacagacatta
tttagaggctataaagaagaaattcctaatattggacttatctcagtgaaatctgatctt
gttgaagattatgctggagatgttttgaagaacctgcctgttttagaaagcaatgatcct
gcagttacttcacttgttaagtacaaggaatttgatgagcttcgtcactggcattctggc
aggcctttgactgaagaatatgagcgagtacggtgcaatgctgatgcaaaatccaaagat
ccagaagaaagaagacaaatacaaaagttgcagacttttcgtcatttttatggaagcact
ttggaagacagcacttcaaaacttattgtacagcaagaggatgtgtcaaggaatgctaat
gctgctgtcaaaaagacacaaaaaccccataaaagtaaagcagaaagaattgcagaggag
aacaacaggcggctaaaaactaaagaagaaaagaaagaacaagagcaatggaaagccttg
tgtataccaactgaaaaggaaataaaagcaaatatgactgttggaataaataaaatggag
aagtttctcaagactcttaaaagtaaatctgtgaagttcagtgtagaaatgacagcactg
tctgcctgtttagcagtgtggaaagaacactgcagagagcaaggtgacaaacctaaagat
ttaagcaaagctgttcaggtcatgaggagaattcatatcctccttgaaaaatatcaagac
ctcttggagaaaccacatctacaaaagctgaccagatatctaagacttcttggatttgag
aatttggcatgctctctatctggccagcaaaaggaaggaagattacataatgatcagaat
gtaagcaagtatgctatcgaagagggtccagctcgctttcaactacaatacatggattat
tacttgctcagagaagagagaaatgatccagatccccgcgtgcaacatttcataccagac
acatggcagcgagaacttcttgatgctgtagataataatgagtctgcggtgattgttgct
cccacttcatcaggaaaaacgtatgcatcatactattgcatggaaaaagttctgaaaacg
agcaatgatggagtagttgtgtatgttgctcctacaaaggcccttgtaaaccaagtggtg
ggaactatatacagtcgattcaccaagaaacttccggatggattggtagtgtgtggagtc
ttcacgcgagattatcgcaatgatgtcatgaattgtcagatactagtgacagtgccacaa
tgtttagaaatcttgatgctgtctcctcgttgccagaaatggaccaaacagatacaatat
gttatatttgatgaggtccattgtcttggtggtgaaattggagcagaggtttgggagcat
cttctggtaacaattcggtgtccatttttggcactctctgctactgtcagtaacccggag
cacctaactgagtggttacaatctgtgaaaaggtattggcaacatgctgagaagacaata
gaaggaagctctgcaaactctgaaaagaactttacaagaaaatgtaaagtgaaatctaaa
gtacaagaacaaaagaaatcatatcgtgttagactagtcttgtatgaagaaagatacaat
gatttggaaaagtatgtgtgttctttaaagggcagtgattttatcattgaacattttcat
ccgtgtgctgcattaacagtcaatcatattgagacctatggtattccttcagatctttct
ctgtctccacgagagagcatccagctttatgacacaatggtaaaagtctggcaaaagtgg
caaagggcacaggagctagatcctgaggagtttgtctctttcaagaataaagtagtaata
aaaaaggcagatgtgaggaaatatgaacaggaactgaagaaagaactaagcaaatggatt
gagcttggccaaagacagaaggtgaatgagctactggagcaccttaagccaaaacctgtg
gattgctcagaacaggaaaagtggaagcattttgcaaactttgttgataaattacatgag
atggataagttgcctgccatattttttatatttaatgtggattcagtggaatgtgcagcc
aagaatgtattcctcaatttgctgagaaaacaaagaagtgaacaagaccctaacaccgag
agggaaaaagaacgtttaagggacgaactaagaaaggtgacaaaaacgctaataaaactc
aactctcgggataccaaaaagttgagctccagtaaaatggaaagcatggtatgtctttcg
actacaaaacaacagttagaaaaaagacttaaaaagctaactgctatcccttctatgtat
acttacactgatcctaaagcagtggatgaagatactttgaggaagatttttcatcgactt
aggtttgagagaagaggttatctgcagcaaatgatggcactgaggggtattgggtatcat
catgcatctatggctgccaaggaaagacaagtagtggagatgcttttcaggctgggatat
atcaaggtagtcacagctacttcaacacttgctctaggaatcaacatgccatgtaaatct
gttgtctttgctgaagattctgtcttcttagatgccctaaattacaggcagatgtcagga
cgagctggaagacggggacaagatatgattggaaatgtgttcttctacgatatcccattg
cccaaagtggaaagacttatcaaatccaatgtacctcagttgaaaggccagtttcctctg
actgtttccttaatattgagactcatgctgttggctgcgaaggctgatgacaaagcagat
gccaaagcaaaggcattgtcagtgttgaaacactcactgatggcattcagaaaagaaaga
tatgctgaaatattaaaaatttattttatgttttccttgcaatttcttatcaaagagggc
tacttggatcaagaaggtaaccccataggatttgctggacttgtgacacacttgtactat
catgaaccttcaaattttgttttagtgagctttcttgtgaaaggtttattccacaaattg
tgccagccaattaaaggctcaactgttttttcagaagatgtcctggaaaagctagtgctc
attctagcaaacctgtttgggagaaaatatcttccagcctgctcaatgaaatataaacgg
tcattttgccagtcaaaggtctttctagaagatctgccagaagactttgcagatgctgta
aatgagtacaacgccaaagtagaggaaaattttgctcactttcttctgacaactgccaag
ctggcagatattgaacaagagtacaggcttccactgtcaaagacagattttacatctaag
aattggcatggctctgaactagcatcttatttgatggacaacaccaaaagcgtatctgcc
atctcaccttttgcatgtttatctggagtggttgataatgatctatttcatggggagatc
attaataaagctgtcttacgttctcttggaattaatgtcacaaactgccccctgctttat
ttgaacaagtatgataatcaaggaaggaagaggccactcaatgcatatgcactggacttc
tataagcatggttgcttgattgcattgacaactgataactggttaactgaaggagatgct
tactacgcactcaaggatttttcactcctcattaaatctattggaacatcactgagtgaa
ctgtgtgacgatccaaatgataatgttctactggcatttcaacaactgggcgaaatctat
gaagagaaactgaagtgtgttacctga
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integrated database retrieval system
