Pelecanus crispus (Dalmatian pelican): 104035935
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Entry
104035935 CDS
T08340
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104035935 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcri03019
]
104035935 (SKIV2L2)
03041 Spliceosome [BR:
pcri03041
]
104035935 (SKIV2L2)
03009 Ribosome biogenesis [BR:
pcri03009
]
104035935 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
pcri03016
]
104035935 (SKIV2L2)
Enzymes [BR:
pcri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104035935 (SKIV2L2)
Messenger RNA biogenesis [BR:
pcri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104035935 (SKIV2L2)
Spliceosome [BR:
pcri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104035935 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104035935 (SKIV2L2)
Ribosome biogenesis [BR:
pcri03009
]
Eukaryotic type
Pre-60S particles
Helicases
104035935 (SKIV2L2)
Transfer RNA biogenesis [BR:
pcri03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104035935 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
104035935
NCBI-ProteinID:
XP_009487647
UniProt:
A0A091T2P3
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
KRSEEKSSVAATGKPKREVEVDSTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETI
EGCTHEVALPADEDFTGLKARTGKPAKEYPFILDAFQRKAILCVDNNQSVLVSAHTSAGK
TVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVM
TTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIP
NARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAM
QVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMT
KLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETI
EILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRR
GMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYRTIPEIVERVNNLEGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYIHKP
KYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESL
KNSATEAAKPARPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQ
KRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQ
IAMDIKVAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELL
LTEMMFSGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRITKVSA
EAKLEIDEENYLNSFRPNLMDVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQM
CQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
2989 nt
NT seq
+upstream
nt +downstream
nt
aaaacgatcggaggaaaaatcttctgtagctgcgacagggaagcccaaaagggaagttga
ggtggatagtactgaagatgctgttctgggaaagaagccaaaattggaagatgttgtatc
agaagatgctaacctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactat
tgaaggttgtacacatgaggttgcacttccagcagatgaagacttcacaggtctgaaggc
aagaactggaaaacctgcaaaagaatatccatttattcttgatgcctttcagagaaaagc
tattctctgtgtagataataaccagtctgtgttagtgtcggctcatacatcagctggcaa
aactgtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatt
tacaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttca
ggatgttggtttgatgactggggatgtcaccattaatcctacggcttcttgtctggtaat
gacaaccgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgc
atgggttatttttgatgaaatccactacatgagagattcagaacgtggtgttgtttggga
agagacaattattttgcttcctgacaatgttcattatgtgttcctttctgcaactattcc
aaatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgat
ttacactgactatcgacccactccactgcagcattatatattcccagcaggaggagatgg
actccatctggttgttgatgaaaatggagatttcagagaagataattttaacacagccat
gcaggtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggagg
aacgaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttcca
acctgtgattattttcagcttcagtaagaaagactgcgaagcctatgcgcttcagatgac
aaagttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgc
aattgattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctct
tctgaagcgaggaattggtatccatcatggcggtctgcttcctatcttaaaagaaaccat
agaaattcttttctctgagggcctaataaaggccttatttgcaacagagacttttgcaat
gggaattaatatgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaa
agatttccgatggatatcttcaggtgaatacattcaaatgtcaggtcgtgcaggacgccg
aggtatggatgacagaggaatagtgattcttatggtggatgaaaaaatgagtccaacaat
tggcaagcaacttttaaagggttcagctgatcctttaaacagcgcattccacctgacata
caacatggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaa
atccttctatcagttccaacattacagaactattccagaaatagtagaaagagtgaataa
tttggaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatacta
caaaatccgacagcagcttgcaaaactgggtaaagagattgaagaatatattcacaaacc
aaagtattgtttgccctttctacagccaggaagattggtaaaggtgaagaacgaaggtga
tgactttggatggggagtggttgttaatttctctaagaaatccaatgttaagccaaattc
tggtgaactggacccattatatgtagttgaagtgctactgcactgcagcaaagagagttt
gaaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgca
ggttgttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacatacc
gaaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtaca
gaagcgatttcctgatggagtaccattactagaccctattgatgacatgggtatcaaaga
tcaaggactgaaaaaagtaatccaaaaagtagaggcgtttgagcacaggatgtattcaca
tcctcttcacaatgatcccaacttggaaaccgtatacaaactttgtgaaaaaaaagcaca
gattgctatggatattaaagtagcaaagcgagaactgaaaaaagccagaactgtcttaca
aatggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacatcttc
agatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactact
cctgacagaaatgatgttcagtggtctcttcaatgacttatctgcagaacaggcaactgc
actactaagctgttttgtgtttcaagagaattccagtgaaatgccaaaattgacagagca
gttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcaccaaggtgtcagc
agaagcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaat
ggatgtggtgtatacatgggcaaatggagctaacttcgctcatatctgcaaaatgactga
tgtctttgaaggtagcataattcgttgcatgagaaggctagaagaattgcttcggcagat
gtgccaggctgcaaaagccattggaaatacagaattggaaaataagtttgcagaggggat
tacaaaaatcaagagggatattgtgtttgctgcaagcctttacctgtaa
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