Pelecanus crispus (Dalmatian pelican): 104037000
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Entry
104037000 CDS
T08340
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104037000 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pcri01001
]
104037000 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pcri04054
]
104037000 (CIITA)
Enzymes [BR:
pcri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104037000 (CIITA)
Protein kinases [BR:
pcri01001
]
Serine/threonine kinases: Other
TAF1 family
104037000 (CIITA)
Pattern recognition receptors [BR:
pcri04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104037000 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
Motif
Other DBs
NCBI-GeneID:
104037000
NCBI-ProteinID:
XP_009489066
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MNLFKEILPRVRKILSTATASDDHALLNLMLKEDVISKEYHQALLHEKDREDLARKISLT
FVEKWDLYLNTLVPLCCLNLCGSKPQNMTDNEPTGSKYISGRLHDTAGCSSPQENSKRQI
MDSTFVSENGYLDLLHSDIDPLHLYTVLDPKSSGNEEGDFSTDPEVDASNYEQFNNMDCL
CTMENGENGDELYLCSNTIEAYARIAELAEYVLKDQQEKQVEDTFAGNLILDEIAAENTE
KFTDIKMQKCHKRTFLGSAESCSDASEPKYKKIVEVPAVSAGNGSFLAMPLNSHPASSAS
LTNQHMSFSVPAANALERSFVMPGMYTPLIPECLPVGMKGSQENTVFADPPQQILNFVLG
NGTSDVMIYPVLTSSVETLISPSFPVSLCGLEMFKEVRVPIIPSEEPFKRPKPVQAFCTS
LMDYFRDVCKSVAMEREVTLDHLFIDGTLVQSQTETKTGKNSVKAMEKEMATCSLQGKEK
AALKRSQIFQIPGCKDVETKLIVVLGKAGXXXXXXXXXXVQKICQDWSSGEFSQFEFVFW
FDCKQISLPEKLYSLKDLLLEFFVKPQEGSKEIFEYILQNPAKVLLVFDGFEGLHDHENF
PRCSARQPEKDLHSIKELLSGLIQKKILNGCTLLLTARPKDKVYQYVSKVDKTIEIVGFS
PQQRELYITKYFEGLPCCDDALKLIKECEYLFSHCYSPVMCRFICFLCETVLEMGDKSLP
STLTTVFLKFVQHKIIPMQTDVTAKQNQESLATLARIAWYLGEKHQSAMKSDLLPFKEVK
EFALKYRFLLPFAFPRHSDSGEEEFRSMFSDFVIQNFLGALHLMLAEEIKDKSLTKYLSF
PSKKKKPYNWLDLVPRFLAGLLFLQDDPYFCSLSMKDVKQSIKKQKILSKYIRRLQINEL
CPERLLELLHCIYETQSNYLLQHVALRLKPDLSFLGVVLTPPDVHVLHSILKRSRKEFSL
DLRNSSIDMQGLKDLVGLKNVASFRASLSDTVRLWKSLEQTKDYTLLRASTEKFVLDPFK
AKTMKDVSDLSDLVEMQEMINCVQDASGCNSYGIPAIKNLRKLEFALGPVCGLQGFLKLV
EILAAFPSLQHLE
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtttaaggagatcctgcctagagtaaggaagattctttcaactgctacagct
tctgatgaccacgcattgcttaacctcatgctgaaagaagatgtgatatccaaggagtac
catcaagctttgctccatgaaaaagacagagaggatcttgcaaggaagatatctctgaca
tttgtggaaaaatgggacctttacttgaacactttggttcccctctgttgtttaaacctc
tgtggcagtaagcctcaaaacatgacagataatgagccaacaggaagcaagtacatttct
ggtagacttcatgatacagcaggctgctcctcacctcaggaaaacagcaagagacaaatc
atggattcaacatttgtgtctgaaaatggctatcttgatttgctgcacagtgatatcgat
ccattgcatctgtatactgtccttgatcctaagtcatctggaaatgaagaaggtgacttc
tctacagatcctgaagttgatgccagcaactatgagcagttcaataatatggattgcctg
tgtacgatggaaaatggtgaaaatggtgatgaattgtatctctgttccaacaccatagaa
gcttatgctagaatagctgaattagcagaatatgtgctcaaagatcagcaggagaagcaa
gtggaagacacttttgcagggaaccttattttggatgaaatagctgctgaaaacactgag
aaattcactgacataaagatgcagaaatgtcacaaacgaaccttcttaggctctgcagag
agttgctctgatgcttcagaacccaaatacaagaaaattgtggaagtccctgcagtgtct
gcagggaatggcagtttcttagctatgcctctcaacagccatccggctagttccgcctca
ctaactaaccagcatatgtccttttctgttcctgctgccaatgcattggaaagaagtttt
gtaatgcctggtatgtatacacctttgattccagagtgtctacctgttggcatgaaaggg
agccaagagaatacagtctttgcagatcctcctcagcagatacttaactttgttcttgga
aatggcacatctgatgttatgatatatccagtgctgacttcttccgtggaaacattgata
tccccaagttttccggttagtttatgtggtttagaaatgttcaaagaagtccgagttccc
ataattccctctgaagaacctttcaaaaggccaaagccagtgcaagctttctgcacatca
cttatggattatttccgagacgtgtgcaaatctgtggccatggagcgtgaagtaactctt
gatcacctgtttattgatgggacacttgttcaaagccaaactgaaaccaagactgggaag
aatagcgtaaaagcaatggaaaaggagatggcaacttgcagcctgcaagggaaggaaaag
gcagcccttaaaaggagccaaatatttcaaatcccaggatgtaaagacgtagagactaaa
ctgattgtggtgctgggaaaagcaggannnnnnnnnnnnnnnnnnnnnnnnnnnnntgta
cagaagatctgccaggactggtccagtggagagttttctcaatttgaatttgtattttgg
tttgactgcaaacaaataagcttgcctgagaagctatacagcctgaaggatttgcttctt
gaattttttgtaaaacctcaagaaggaagcaaagagatctttgagtatatattgcaaaat
cctgctaaagtccttctggtttttgatggttttgaaggattgcacgatcatgaaaatttt
cctcgttgctcggccaggcagcctgaaaaagacttgcacagtataaaagagctgctttca
ggactcatccaaaaaaagatactcaatggttgtactttattacttacagcaagaccaaaa
gacaaggtgtaccagtatgtgtccaaagtggataagactattgaaatagtaggcttttcc
cctcagcagagagaactgtacataaccaaatactttgaaggattaccctgctgtgatgat
gcactgaaattaattaaagagtgtgagtacttgttcagtcattgttacagccctgttatg
tgtagatttatttgtttcctctgtgagacagtacttgaaatgggagacaaaagccttcct
tcaactcttactacagtcttcctgaaatttgttcagcacaagataatacctatgcaaaca
gatgttacagccaagcaaaatcaagagagtcttgctacactagcccgtatagcctggtat
cttggagaaaagcatcaaagtgctatgaaaagtgatcttcttccttttaaggaagttaaa
gagtttgctctgaaatatagatttctcctgccatttgcatttcccaggcattcagatagc
ggagaagaggaatttaggagcatgttctctgattttgtcattcagaatttcttgggtgca
cttcacctgatgttagcagaagagatcaaggataaaagtctaacaaagtacctgtctttt
ccatccaagaagaaaaaaccttataactggttagatttagtgcctcgatttttggctgga
ttgttgttcctccaggatgacccctacttctgctccctttcaatgaaggatgtaaaacaa
tcaatcaagaagcagaaaatactctcgaaatacattagaaggctgcagataaatgagctc
tgtccggagaggttactcgagcttttacactgtatttatgaaacacaaagcaattatctt
ttgcagcatgtggccttaaggctcaagccagacctgtcctttctgggtgtagttcttaca
ccacctgatgtccatgtactgcactctattttaaaaaggtcaagaaaagagttttccttg
gatttgcgaaacagcagcattgacatgcaaggtctaaaagacttggttggcctaaagaat
gtggcatcattcagggcctccctcagtgatacagtcaggctctggaaatctttagaacaa
acgaaagattacacgctgctgagagcatcaacagagaaatttgttcttgatccttttaag
gcaaagacaatgaaggacgtcagtgacctttcagaccttgtagagatgcaggagatgatc
aattgtgtgcaagatgcatctggttgcaacagctatggaattcctgccatcaaaaacctc
agaaaactagaatttgcgctgggtccagtatgtggcctacagggattcctaaaactcgtg
gaaattcttgcagcatttccatcacttcagcatttagagtga
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