Pelecanus crispus (Dalmatian pelican): 104037341
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Entry
104037341 CDS
T08340
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri03013
Nucleocytoplasmic transport
pcri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104037341 (UPF1)
03015 mRNA surveillance pathway
104037341 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcri03019
]
104037341 (UPF1)
Enzymes [BR:
pcri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104037341 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104037341 (UPF1)
Messenger RNA biogenesis [BR:
pcri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104037341 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104037341 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104037341
NCBI-ProteinID:
XP_009489530
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaatggacctgatggcattctgcagaatggagctgtggatgataatgtggctaaaacc
agccagcttctggcagaattgaattttgaagaagatgaagaagatacttattacacaaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacaccagcaaaaagtggttctgtaacgggcgtggaaatacatctggcagccacatt
gttaatcatcttgtgagagcgaagtgcaaagaggtgactctccataaagatggacctcta
ggagagactgtcttggaatgttataactgtggatgtcgtaatgtgtttctccttggcttt
attccagctaaggcagactctgtggttgttttgctgtgcaggcagccatgtgccagtcag
agcagtttaaaggatattaattgggacagttcacagtggcagcctcttatccaagatcgc
tgtttcctttcgtggctggtaaagattccatctgaacaggagcagttgagagcacgtcag
attacagctcaacagattaacaaactggaagaactctggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatat
gaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcagactat
gacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgtttgaggtataaaggagacctggcccctttatggaaagga
attggtcatgttatcaaagttcctgataattatggtgatgagatagccattgagctgagg
agcagcgttggagcgcctgtggaagttactcataacttccaagtggattttgtatggaag
tctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttca
gtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtacc
ggaaaaacagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcct
gtgttagtctgtgctccaagtaatatagctgtagatcagttgactgagaagatccatcaa
actggactgaaagtggttcgtctgtgtgctaaaagtcgtgaagccattgactctcctgta
tccttcttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaa
ctgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgt
gcactgaaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttgcacg
tgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgat
gaaagcacgcaggccactgagccagagtgcatggtgccagttgtcctgggagcaaagcag
cttattcttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgca
aaggccggcttatctcagtctctctttgagaggcttgtggtgctgggcattcgtccgatt
cgcctgcaagtgcagtatcgcatgcatcctgcactcagtgcttttccatccaatatcttc
tatgagggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaagggtttgat
ttccagtggccacagccagataagccaatgtttttctatgttacacaaggacaggaagaa
attgccagctcaggcacttcttacttgaacaggacggaagctgccaatgtggagaagata
actacaaagctattgaaagctggtgccaaaccagatcagattggcattattactccttat
gaaggtcaacgatcctatctggtgcagtacatgcaattcagtggttccttgcatacaaag
ctctaccaggaagtggaaattgcaagtgtggatgccttccagggccgagagaaggacttt
attatcctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgacccc
aggcgtcttaatgtagcccttacaagagcaaggtatggagtaattattgttgggaaccca
aaagcactgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaa
gttctggtggagggaccactgaataacctccgggaaagcctcatgcagttcagcaagcct
cggaaacttgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgat
gcacgtgaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatcc
aacatgtacttccaaacccacgaccagatcgggatgattagtgccggccccagccacgtc
actgctatgaacattcctatccctttcaaccttgtcatgccaccgatgccaccaccggga
tactttggccaggctaacggaccagccgcaggacgtggggcgccaaaaggaaagactggt
cgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttcca
aatagtcaagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcag
gggtatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaa
ttatcacaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
