Penicillium rubens: N7525_002937 Help Entry N7525_002937      CDS       T01091                                  Name (RefSeq) uncharacterized protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism pcs  Penicillium rubens Pathway pcs03013   Nucleocytoplasmic transport pcs03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:pcs00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     N7525_002937    03015 mRNA surveillance pathway     N7525_002937  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pcs03019]     N7525_002937 Enzymes [BR:pcs01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      N7525_002937     5.6.2.5  RNA 5'-3' helicase      N7525_002937 Messenger RNA biogenesis [BR:pcs03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      N7525_002937    mRNA cycle factors     Common to processing body (P body) and stress granule      N7525_002937 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD Viral_helicase1 UvrD-helicase NPHP3_N NAT10_TcmA_helicase SLFN-g3_helicase PIF1 nSTAND3 AAA_22 ATPase zf-B_box_Trim66 AAA_16 Motif Other DBs NCBI-GeneID:  8311666 NCBI-ProteinID:  XP_002559649 UniProt:  B6H5A7 LinkDB All DBs Position Unknown AA seq 1079 aa AA seqDB search MSYQPEDPSAGAEIDEIALGRARPRRHDDEDEGSDAFEDDDIESTVGAPTNGNQKSQGNG EEEIELPAHACAYCGIHNPSSVVKCLSCNKWFCSARGNTSSSHIVNHLVRARHKEVQLHP ASSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCASMPSSKDMNWDTSRWQPL IEDRSFLPWLVGAPTDQEQLRARHLSPQLIAKLEEMWKDNSQATLEDLEKATAVDDEPAP VLLRYDDAFQYQNIFGPLVKIEADYDRKLKESQSQDGLIVRWDLGLNNKHLASFVLPKLE LGDVKLAVGDEMRIKYNGELRPKWEGVGYVIKIPNNQSDEVTIELRAKGDHKSVPTECTH NFMADYVWKSTSFDRMQCAMKTFAVDEQSVSGYIFHRLLGHEVAAAPMKTQIPKKFSVPG LPDLNGSQINAVKSVLQRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAV DQLCERIHRTGLKTVRVTAKSREDVESAVGFLSLHEQVRMNDSNIELVKLNQLKAELGEL SSQDEKRLKQLTRSAEREILTNADVICCTCVGAGDPRLSKGKFRTVLIDESTQSAEPECM IPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILGCSPIRLNVQYRMHPC LSEFPSNMFYEGSLQNGITIADRVRRDVDFPWPIIDDPMMFWSNLGNEEISASGTSYLNR TEATNVEKIVTRFFKAGVQPKDIGIITPYEGQRSYIVSSMQANGTFKKEHYKEIEVASVD AFQGREKDYIILSCVRSNDHQGIGFLSDPRRLNVALTRARFGLVILGNPKVLSKHPLWNC LLQHFKERHCLVEGPLSNLQESLIQFSRPKQAYRGPQRFQMSFSQTNNVPSNAVNGRNGG HRNEYHDSGSVVGYIPDDVSSVHGSALGGVGLPSGYPPMFQNFGESWPAISGGRRANGGR PKGAPSVTGESVAATESDVTCSVTDGRSVDQGGVSLTGLSINDMSKQPSLSQSDRLKRYV ESGGREPYRAGVPDNGSIFGGSSASIRVTRGVPGQSPHDDDDVRSVSTAFASQVGGNYD NT seq 3240 nt NT seq  +upstreamnt  +downstreamnt atgagctaccagccggaagacccctcagcgggagccgaaatcgacgagatcgcacttggg cgcgcacgtccacgccggcatgatgatgaagatgaaggctctgatgcctttgaagatgac gacatagaaagcacagtcggcgcacccacaaacgggaatcagaagtcccaaggaaatgga gaggaggaaatagagctcccagcccatgcatgcgcgtactgtggcattcacaacccgagc agcgttgttaaatgtctgtcgtgcaataagtggttctgcagtgcacgtggcaatacctct tcttcccatatcgtcaatcaccttgtccgagctcgtcataaggaagtccagcttcacccc gcctcttctttgggtgatactattctggaatgctacaactgtggcaccaaaaatgtcttc ctgcttggattcattcccgcgaaatccgatactgttgttgttttgctatgtcgacagcca tgtgcctctatgccatcctctaaggacatgaactgggatacatcacgatggcagcctctt attgaggatcgttctttccttccctggctcgtgggagcacccaccgaccaagaacaactc cgagcccgtcacctcagtcctcaattgattgcgaaactggaggaaatgtggaaagacaac tctcaggcgaccctggaagacctagaaaaggccacagcagtggatgatgagccggcgcca gtcctactccgctacgacgatgctttccagtaccaaaacattttcggaccactcgttaaa atcgaggctgattacgaccgcaagttgaaggaatcccaatcccaggatggactcattgtg cgctgggatcttggtctcaacaacaagcacctcgcaagctttgtgctgccaaagcttgag ctgggagatgtcaaattggctgtgggcgacgagatgcgcatcaagtacaatggtgaattg cgtcctaagtgggagggtgtgggctatgtgatcaagatcccgaacaatcaatctgatgag gtcactatcgaactacgcgccaagggcgaccacaagtcagtccctacagaatgcacgcac aattttatggccgactatgtttggaagtcaacttcctttgaccgcatgcaatgtgccatg aagacatttgccgtggatgagcagagtgtctcaggctacattttccatcgcctccttggc catgaggttgctgcagctcctatgaagacccagattccgaagaagttcagtgtcccaggt ctgccagatctgaacggcagtcaaatcaacgctgttaagagtgtcctccagcgacctctc agtttgatccaaggcccccctggaactggtaagaccgttacctcagccaccatcatctat catcttgccaagatcaatggaggccaggttcttgtctgcgctccgtccaacgttgcggtt gaccagctctgcgaacgtattcatcggacgggcctgaagactgtgcgagttactgccaag tctcgcgaggatgtggaatctgctgttggtttcctttcactgcacgagcaggttcgtatg aacgatagcaacattgagttggtgaaactcaaccagctcaaggccgaacttggggaattg tctagccaagacgaaaagcgcctgaagcaacttactcgctctgctgagcgtgagattctg accaacgcggatgtgatctgctgtacttgcgttggtgcaggtgatccccgtctttcaaag ggcaagttccgcacagtcttgattgacgaatcaacccaatctgctgagcccgagtgcatg atccccttagttctaggctgcaaacaagttgtactggttggtgatcaccagcagcttggg cccgtgatcatgaacaagaaggctgccaaggctggtctaaaccagtctctgttcgagcgt ctcgttatcttgggctgctctcctatccgtttaaatgtccagtatcgtatgcacccgtgc ctttctgaattcccgtcgaacatgttctacgaaggctcgctacagaacggcatcaccatt gccgatcgtgtccgccgtgacgttgacttcccttggcccatcatcgatgatcccatgatg ttctggtcaaacctgggcaacgaagagatatcggcgtcaggcacctcgtatctgaaccgc actgaagctaccaacgtcgagaagattgtcacacgtttcttcaaggcaggtgtccagccg aaggatatcggtatcattactccttacgagggacagcggagctacatcgtcagctcgatg caggcaaacggcacctttaagaaggaacattacaaggagatcgaggtcgcgtcggtcgat gcattccagggccgagagaaggattacattatcctttcgtgtgttcgttccaatgatcac caaggtataggtttcctgagcgatcctcgtcgcctcaacgtggcccttactcgtgctcga tttggcctggttatcctaggaaaccctaaggtcttgtctaagcacccattgtggaactgc cttttgcagcacttcaaggaacgtcactgtctcgtggagggacccctgtccaaccttcag gagtccctgattcaattcagccggcctaagcaagcatacagaggcccgcagcgcttccag atgtccttcagtcaaaccaataatgtacccagtaatgcagtgaatggtcgcaacggcggt catcgcaatgagtatcatgactctggatcggtggtgggatatatccctgacgatgtatct tccgttcacggttcggcacttggtggtgttggccttccatctggctatccccctatgttc cagaatttcggcgagtcctggcctgcgatctctggcggtcgtcgagcaaatggtggccga cccaagggcgcaccgagtgtgactggcgagtcagtcgctgctactgagtctgatgtcacc tgcagcgtcactgacggacggagcgttgaccagggcggtgtcagtctcactggtctgagc attaacgacatgagcaagcagcccagtctcagccagtctgaccgattgaagcgctacgtc gagtctggcggacgggagccttacagggctggagttccggacaacggcagcatatttgga ggcagctccgccagcatccgcgtgactcgcggtgtgccgggccagagccctcacgatgat gacgatgtccgtagcgtctctaccgcttttgctagccaagtcggtggcaactatgactga

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