KEGG   Penicillium rubens: N7525_003993
Entry
N7525_003993      CDS       T01091                                 
Name
(RefSeq) Helicase C-terminal
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
pcs  Penicillium rubens
Pathway
pcs03013  Nucleocytoplasmic transport
pcs03015  mRNA surveillance pathway
pcs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    N7525_003993
  09122 Translation
   03013 Nucleocytoplasmic transport
    N7525_003993
   03015 mRNA surveillance pathway
    N7525_003993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcs03019]
    N7525_003993
   03041 Spliceosome [BR:pcs03041]
    N7525_003993
Enzymes [BR:pcs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     N7525_003993
Messenger RNA biogenesis [BR:pcs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     N7525_003993
Spliceosome [BR:pcs03041]
 Complex C
  Other components
   EJC/TREX
    N7525_003993
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    N7525_003993
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 Ned1_M DUF4844
Other DBs
NCBI-GeneID: 8310929
NCBI-ProteinID: XP_002566290
UniProt: B6HQ47
LinkDB
Position
Unknown
AA seq 442 aa
MSHEEDLIDYSDEELQTTTAPATTAAPAATNGDADKQGDLTVTGGRPDKKGSYVGIHSTG
FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTSILNVDVLCQAKSGLGKTAVFVLTTLHQ
LEPVPGECQILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEILSNKET
HPNIVVATPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV
MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLDEKEKNRKLNELLDN
LEFNQVIIFVKSTQRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVAT
DVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIE
KRFEVALPEYPEAGVDSTTYMA
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgtctcacgaggaagatcttatcgactactctgatgaggagcttcagaccaccactgca
ccggccaccactgctgcgcctgccgccaccaatggcgatgccgacaagcagggtgacttg
actgtaaccggtggccgtcctgacaagaagggcagctacgtcggtatccactcaaccggt
ttccgcgacttcctgctgaagggtgaacttctgcgcgccatcaccgactgcggcttcgaa
catccatcggaggtccagcaagtttgcattccgacttccattctgaacgtcgacgttctt
tgccaggccaagtctggtctcggtaaaaccgcggtcttcgttctcaccaccctccaccaa
ttggagcccgttcctggcgagtgccagatcctggtcatgtgccacacccgtgagctcgct
tatcagattaagaacgagtacgcccgtttctcgaagtacttgcccgatgttaagactgcg
gtcttctacggtggtactccgatccagaaggacgtcgaaatcctgtccaacaaggaaacc
caccccaacattgtggtggccactcccggtcgtctgaacgcgttggtccgtgacaagaaa
ttgtccttgcgcaacgtgaaggccttcgttctcgacgagtgtgacaagatgctggaccag
attgacatgcgccgtgatgtgcaggaaatcttccgtgcgactcccgccgacaagcaggtc
atgatgttcagtgctaccctctcccaggagattcgtcccatctgcaagaagtttatgcgc
aacccgctggaggtctatgtcgatgacgataccaagctcaccctccacggcttgcagcag
tactacatcaagctcgacgagaaggagaagaaccgcaagctgaatgagcttttggacaac
ctcgaattcaaccaggtcatcatctttgtcaagagcacccaacgtgccaacgagctggat
aagctgttgcgcgagtgcaacttccccagtatcgcagttcactctggtgtcagccaggag
gagcgtatcaagcgctacaaggagttcaaggagttcaacaagcgtatctgtgttgccact
gatgtcttcggtcgtggtattgatatcgagcgcattaacctcgccatcaactacgatctc
cccgccgacgctgactcttacctgcaccgtgttggtcgtgccggtcgtttcggtaccaag
ggtctttctatctccttcgtcagcaacgaggatgacgagaaggttcttaaggagattgag
aagcgctttgaggttgctcttcctgagtatcccgaggcgggtgttgactccaccacctac
atggcttag

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