Penicillium rubens: N7525_004515
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Entry
N7525_004515 CDS
T01091
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcs
Penicillium rubens
Pathway
pcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7525_004515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcs03019
]
N7525_004515
03041 Spliceosome [BR:
pcs03041
]
N7525_004515
03009 Ribosome biogenesis [BR:
pcs03009
]
N7525_004515
03016 Transfer RNA biogenesis [BR:
pcs03016
]
N7525_004515
Enzymes [BR:
pcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N7525_004515
Messenger RNA biogenesis [BR:
pcs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
N7525_004515
Spliceosome [BR:
pcs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
N7525_004515
Complex C
U4/U6.U5 tri-SnRNP related factors
N7525_004515
Ribosome biogenesis [BR:
pcs03009
]
Eukaryotic type
Pre-60S particles
Helicases
N7525_004515
Transfer RNA biogenesis [BR:
pcs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
N7525_004515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
VasI
AAA_22
eIF3_p135
HTH_27
Motif
Other DBs
NCBI-GeneID:
8313495
NCBI-ProteinID:
XP_002565740
UniProt:
B6HUK7
LinkDB
All DBs
Position
Unknown
AA seq
1078 aa
AA seq
DB search
MDELFDVFEDQPQAVKPSEGAPKRLKKDKHKKRQVNGAVKKTADTQPEQKEDVAMSDAPA
AEVDSADAEAPATPSEPEQPETKRPRLDQEPEPVVADSFETEQEREIAAGGLATDTDAVV
VSHQVRHQVAIPPNYPYVPISQHKAPANPAKTWPFTLDPFQQVAVSSIQREESVLVSAHT
SAGKTVVAEYAIAQSLKQNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTAT
CLVMTTEILRSMLYRGSEIMREVQWVVFDEIHYMRDVNRGVVWEETIILLPDKVRYVFLS
ATIPNAMQFAEWIVKMHDQPCHVVYTNYRPTPLQNYFFPAGGEGIHLVVDEKGVFREENF
QKAMSAIADKKGDDPADALAKRKGKGKDKQINKGGIKGPSDIYKIVRMIMLKNYNPVIVF
SFSKRECEAGALQMSKLTFNDDSEKNMVSKVFESAIEMLSPEDRQLPQIQNILPLLQQGI
GVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQRWV
TPSEFIQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILN
LMRVEGISPEYMLERCFKQFQNTGSVSGLEKELEGLEEKRANMIISDEGTIREYYDLRKQ
LDAFADDVQHVITHPNYSLTYIHPGRLIHVKYKDADFGWGVVINQKKRKQANNETEKFSP
HQSHIVDVLMRMSGGSSIGTKSFQDLPPGVRPAKEGEPTRSEVVPIVLSCITEISHIRIM
LPKDITSPGSRNDVMKSVDEVKRRFPDGVPLLDPIENMQIKDESFKKLLRKIEVLESRLL
SNPLHNSPRLTELYEQYAEKVDLTANIKAIKKQITEAMSILQLDELKCRKRVLRRFGFIN
EADVVQLKARVACEISTGDELMLSELLFNGFFNNLTPEQVASVMSCFVFEEKVKEAPTLT
KDELAKPLKEIQSQARIIAKVSQESKMAVNEDEYVQSFHWELMEVIYEWSQGKSFADICK
MTDVYEGSLIRVFRRLEECLRQMAQAAKVMGSEDLESKFEEALGKVRRDIVAAQSLYL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctctttgacgtctttgaggaccagcctcaggcggtgaagccgtctgagggt
gcccccaagcgcttgaagaaggataagcacaaaaaacgacaggtgaatggagccgtgaag
aaaactgcagatacccagcctgaacagaaggaggatgttgcgatgagcgatgcacccgcc
gcagaagtcgactcagcagatgccgaagcccccgcgactccgtccgaaccagagcaaccc
gagacgaagcgacctcgattggatcaggaacccgagccagtcgtcgccgattctttcgaa
accgagcaggagcgtgagattgcagctggaggacttgctacggacaccgatgcagttgtg
gtgtctcatcaagtgcgccaccaagtcgcaatcccacccaactacccttatgtgcctatc
tcccagcacaaggctccggcgaacccagcaaagacatggcccttcacacttgatcctttc
cagcaggtcgcagtttcttcaatccagcgtgaggagagtgtgctggtgtcagctcacact
agtgccggaaagactgtggtggcagaatacgccattgcgcaaagtttgaaacaaaaccag
cgagtgatctacaccagtccgatcaaggcgctcagtaaccagaagtaccgtgaatttgct
gccgagtttggcgacgtcggcctaatgactggtgatgtgaccatcaatcccactgctaca
tgtcttgttatgaccacagagattcttcgttccatgttgtaccgtggctctgagattatg
cgtgaagttcagtgggtggtcttcgatgaaattcactacatgcgagacgtgaatcgtggt
gtcgtttgggaagagactatcattctgttgcccgataaggtccgctatgttttcctgtcc
gccactattccgaacgccatgcaattcgccgaatggatcgtgaagatgcacgaccaaccc
tgtcacgttgtctacaccaactatcgtccgacccccctccagaattacttcttccccgct
ggtggagagggtatccatctcgtggtggatgaaaagggagtcttccgcgaggagaacttc
cagaaggcaatgagcgcaatcgctgacaagaaaggcgatgacccggctgatgctttggcc
aagcgcaagggcaagggcaaggataagcaaatcaataagggtggaatcaagggcccgtcg
gatatctacaagatcgtcagaatgatcatgcttaagaactacaaccccgtcattgtcttc
agcttcagcaagcgagagtgtgaagcaggtgctttgcagatgagcaaactgactttcaac
gacgattccgagaagaatatggtgtccaaggttttcgaaagtgccatcgagatgttgtct
ccagaggatcgccaattgccacagatccaaaacatccttccgcttttgcaacaaggcatc
ggtgtccatcactcaggattgctgccaattctaaaggaaaccattgagattcttttccag
gagggtctcatcaaggttctgtttgcaactgagactttctccattggtctcaacatgcct
gccaagactgtagtttttaccagtgtgcgcaaatttgacggaactagccagcgttgggtt
accccgtctgaattcatccagatgtctggtcgtgctggtcgtcgaggtctcgatgaccga
ggtattgtgatcatgatggtcggagaggagatggatccagcagtcgcgaaggagattgtg
cgcggtgaacaggaccgactcaattccgcattccacttgggctacaacatgattctcaac
ctgatgcgtgtggagggtatctcacccgaatacatgctcgaacgatgcttcaagcagttc
cagaacactggaagcgtttcaggcctggagaaggagctcgaaggtcttgaggagaagcgc
gcgaacatgattatctcggacgagggaaccatccgcgaatactacgacctacggaaacaa
ctagacgcatttgcggacgatgtccagcatgttattacccacccaaattactctttgact
tacatccaccctggacgattgatccatgttaagtacaaagatgccgatttcggttggggc
gtggtgatcaaccagaagaagcgcaagcaagcgaacaatgagaccgagaaatttagtcct
caccaatctcatattgttgatgtcttgatgaggatgtcgggagggtcgtccattggcact
aagtctttccaagatcttccgcccggtgttcgccccgcaaaggaaggggaaccgactcgc
agtgaggttgtgcccattgtgctgagctgcatcacggagatctctcacattcgcatcatg
cttccgaaggacatcacgtcgcccggctctcggaatgatgttatgaagtcggttgatgaa
gttaagaggcgcttcccagacggtgttccgctgcttgatccgattgagaacatgcagatt
aaggatgaaagcttcaagaagctgctacggaaaatcgaggttcttgagtctcgcctcctg
agtaaccctttgcacaactcgccacggttgactgaattgtacgaacaatacgccgagaag
gtggacctgactgcaaatatcaaggcgataaagaagcagattacagaagctatgtcgatc
ttgcagcttgatgagctgaagtgccgcaagcgcgtacttcgtcgtttcggatttatcaac
gaagccgatgttgtgcagttgaaggctcgtgttgcttgtgaaattagcacaggcgatgaa
ctgatgctgagcgagctgctgtttaatggtttcttcaacaacctgactcctgagcaagtc
gcttccgtcatgagttgtttcgtgtttgaagaaaaggtcaaggaagcccctactttgacc
aaggatgagttggcaaagccattgaaggagatccaatcacaggcccgcatcatcgccaag
gtgtcgcaggagtctaagatggccgtgaatgaagacgagtacgttcagagcttccactgg
gagctgatggaggtgatctacgagtggagtcagggcaagtcttttgcagatatctgcaaa
atgaccgatgtctatgagggtagtttgatccgtgtcttccgccggttggaagagtgtttg
cggcagatggcgcaagctgccaaggtgatgggcagcgaagacctggagagcaagttcgag
gaggccttgggcaaggtccgccgcgatattgttgctgcccagtccctgtacttgtag
DBGET
integrated database retrieval system
