Penicillium rubens: N7525_010414
Help
Entry
N7525_010414 CDS
T01091
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pcs
Penicillium rubens
Pathway
pcs03020
RNA polymerase
pcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N7525_010414
09124 Replication and repair
03420 Nucleotide excision repair
N7525_010414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcs03021
]
N7525_010414
03400 DNA repair and recombination proteins [BR:
pcs03400
]
N7525_010414
Enzymes [BR:
pcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N7525_010414
Transcription machinery [BR:
pcs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
N7525_010414
DNA repair and recombination proteins [BR:
pcs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
N7525_010414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
8311475
NCBI-ProteinID:
XP_002561697
UniProt:
B6H9U6
LinkDB
All DBs
Position
Unknown
AA seq
1733 aa
AA seq
DB search
MSNVFFPYSKAPLRTIKEIQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRL
GTIDRQYNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTA
DSKFTEALRFRDPKRRFDAIWRLSKDVLVCEADAPADDEEFSKESQKGRSHGGCGNAQPT
VRKEGICLVGTWKPSKAMMEDEMAQPEKKVITPTMALNIFRNISVEDVRIMGLSNDYARP
EWMILTVLPVPPPTVRPSVVMGTTSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVI
REFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSA
RTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPGARYIVRDN
GERIDLRHAKRAGAQQLLYGWKVERHLDDGDYILFNRQPSLHKESMMGHRVRVMPFSTFR
MNLSVTSPYNADFDGDEMNLHVPQGEESRAELAELTLVPKNIVSPQRNGPLMGIVQDTLC
GIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAIIKPRPRWTGKQMISMAFPSGLNLL
RVDKDGSPLSEKFSPLNDGGLLIHGGQLMYGMLSKKTVGASGGGVIHTIFNEYGPDTCVK
FFTGAQTIVGYWLLHNGFSIGIGDTIPDQLTINKIEEAVRNRKQEVEEITASATENTLEA
LPGMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTAL
VGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGL
IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQRVD
HIKCSDAKLLERFRVDVMDPERTLGPEILEQANEIAGDIEVQRYFDEEWEAILKDREFLR
TVVKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQVQQLLDRLVIVRGND
PISQEAQVNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAIESRFARAAANPGEMV
GVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEGVK
THDKEGAKLLRSLVEHTSLRSVTESTEIYYDPDIQSTVIENDRDMVESYFIIPEDNADDA
SQQSKWLLRIVLSRRSLLDKGLTVQDVATRIKQAYPRDIAVIFSDNNADEQVIRIRQVQD
YKDDEDEDIEYDVTLKKLEQHLLDTLTLRGVPGVDRAFINEKSKVRVVEDGTLHTSKSDP
LCKEWVLETSGSSLAAVLAIPGVDASRTYSNQFIEIFEVFGIEAARTAVLRELTLVLAFD
GSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELD
DCRGVSENLILGQMAPAGTGEFDVYLDQSLLNTVVSNNARYGLMGAVGAKDAIISDGAAT
QYDTGSPMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTEYQATTSTFGGFSPAARSPGGY
SPTSPFNTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPASPTFQPTSPAYSPTSPAYGQA
SPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSPTSP
TSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPTSPAYSPTSPAYSPTSPRQ
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgtgtttttcccatattccaaggcgcctctgcgcaccatcaaggaaattcag
tttggtctctttgcccccgaagagatcaagcgcatgagtgtggtccacattgaatatcct
gaaacactggatgatcaacgtcaacgacctcggactaagggtatcaacgaccctcgcctg
ggtacgatcgaccgtcaatacaactgcgagacttgcgaagagggcccgaaggaatgccct
ggacacttcggtcacattgagctcgcgtctccagtcttccatattggttttttgactaaa
atcaagaagctgttggagacagtttgccacaattgtggaaagatcaaggccaacacggcc
gattccaagtttacagaagccctccgtttccgtgaccccaagcgacgctttgacgctatc
tggcgactctccaaggatgtgctggtatgcgaagccgacgcacccgctgatgatgaggaa
ttttcgaaggaatcccagaagggccgctcccatggtggctgtggtaacgcccagcccacc
gttcggaaggaaggcatctgtttggttggaacctggaagcccagcaaggctatgatggag
gatgagatggctcaaccggagaagaaagtcattacgcccacaatggccttgaacatcttc
cgaaacatctccgtggaagatgtccgcattatgggtctcagcaatgactacgctcgtccc
gagtggatgattcttactgtcttgcctgtccctcccccgaccgtccgtcctagcgttgtg
atgggaaccacaagtggcgctcgcggtgaggatgatttgacttacaagctcgcggaaatt
gtccgtgcgaaccaaaatgttcaacgctgtgagcaggagggagcaccagagcatgtcatt
cgtgaattcgaatctctgcttcaataccacattgccacttacatggacaatgacattgct
ggtcaacccacggcgatgcaaaagggaaaccgccctgtgaaggctcttcgcagtcgtctg
aagggtaaagagggtcgtttacgtcagaacttgatgggaaagcgtgtcgatttctccgct
cgtaccgttatcacaggtgaccccaatttgagactcgacgaggtcggtgttccatactcg
actgctcgtattctcacctacccggaagttgtcacaccctacaatattgagaaacttcag
aggctggttgccaacggacccaaccttcaccctggtgccagatatattgttcgtgataac
ggtgaacgcattgatcttcgtcacgcgaagcgcgcgggagctcagcaactgctgtatggt
tggaaggtcgagcgccatcttgacgatggcgattacattctgttcaaccgtcagccgtct
ttgcacaaggaatccatgatgggtcaccgtgtccgcgttatgcccttctccacattccgg
atgaacttgtctgttaccagtccttacaacgctgatttcgacggtgatgagatgaacttg
cacgtccctcagggtgaagagtcgcgcgctgaactcgctgagcttactttggtcccgaag
aacattgtttctccgcagcgtaacggtcctctgatgggtattgtccaggatacactctgt
ggtatctacaagatctgccgccgtgacaccttccttaccaaagaccaggtcatgaacctc
atgctgtgggtccccgactgggatggtgccattccccctcctgcaatcattaagcctcgc
ccccgttggactggaaagcagatgataagtatggctttcccctcaggccttaaccttctg
cgcgttgacaaggacggctcgcctttgtccgagaagttcagtcctctcaatgatggaggt
ctcttgattcacggtggacagctgatgtatggtatgctttccaagaagacggtcggtgcc
agtggtggtggtgtcatccacaccatcttcaacgagtacggtcctgatacttgcgtcaaa
ttcttcactggtgcccaaacaatcgtcgggtattggttgctgcacaacggtttcagtatt
ggtatcggtgacaccattcccgatcaacttactatcaacaagatcgaggaggctgttcgg
aacagaaaacaggaagtcgaggagattacggctagtgccactgagaacacattggaggca
cttcctggtatgaatgtacgtgagacattcgagagcaaggtctctcgtgctctcaacaac
gcccgtgatgaagccggtgatgccaccgaaaagagtcttaaggatctgaacaacgctatt
caaatggcgcgctccggttctaagggttcagcaatcaatatttcgcagatgactgcgctt
gtgggacaacagtccgtggaaggcaagcgtattccgttcggcttcaagtatcgtaccctt
cctcacttcaccaaggacgattactctcccgagtcccgtggattcgttgagaactcatac
cttcgtggcttgactcctactgagttcttcttccacgccatggctggtcgtgagggtctg
attgatactgctgtcaagactgccgaaactggttacatccagcgtaagctggtcaaggcc
cttgaggaagtcatggtcaaatatgatggcactgtccgaaactcccttggagatatcatt
cagttcatctacggagaggatggtctcgacggtgcccacattgagaaccagcgtgttgat
cacatcaagtgttccgatgccaagctgttggagcgattccgtgttgatgttatggacccc
gagcgaacccttggcccagaaattctggagcaagccaatgaaattgccggtgacatcgag
gtacagagatactttgatgaggaatgggaggccattctgaaagaccgtgaattcctgcgc
actgtggtcaaagaggacgaggagatgatgcagcttcccatcaatgttcagcgtatcctg
gaaatggcccgaaccactttccgtattcgcgagggtacaatcagtgatttgcaccctgct
gaggtcattccccaagtccaacagctgttggatcgcttggtgattgttcgtggtaacgat
cccatttcgcaggaggctcaggttaacgcgactttgctgttcaaagcgcaactgcgcagt
cgtctcgctttccgccgcctcgttacagactattcgctcaacaagcttgcattccagcat
gtgttgggtgctatcgaaagccgtttcgctcgtgcggcagccaaccctggtgaaatggtc
ggcgttcttgcggcccagtctattggtgagcccgcgactcaaatgacactgaacactttc
cactttgctggtgtgtcgtccaagaacgtcacgcttggtgtgccacgtctgaaggaaatt
ctcaacgttgccacgaacattaagacgccatccatgactgtgtaccaggaaggtgtgaag
acccacgataaggagggcgccaaactccttcgaagtcttgtggagcacacaagtctgcgc
tctgtgacggagtcgacggagatttactacgatcccgatatccagtccactgttatcgag
aacgatagggatatggtggaatcatacttcatcattcctgaagataatgccgacgacgca
tctcagcagtcgaagtggttgctccgtattgttctcagccgccgctcgcttcttgacaag
ggtctcacggtgcaagacgttgccacaagaatcaagcaggcttatcctcgcgatattgca
gtcatcttcagtgataacaacgccgacgagcaagttatccgtatccgtcaggtccaagac
tacaaggatgacgaagacgaagatattgagtacgacgtcaccttgaagaaacttgagcag
cacttgctggacactttgacccttcgtggtgttcctggcgttgatcgtgcattcatcaac
gagaagagcaaggtcagagtcgtcgaggacggtacgctccacaccagcaagtccgaccct
ctttgcaaggaatgggttctggaaaccagcggatcctctttggctgctgttcttgcgatt
ccgggcgtcgacgcctcgcgcacttactccaaccagtttattgaaattttcgaggtcttc
ggtattgaggctgcccgtacagctgtccttcgtgaattgaccctcgtgcttgcctttgac
ggttcttacgttaaccaccgtcacttggctctgctggtcgatgtcatgactgttcgtggt
tatctgactcctgttactcgtcatggtattaaccgtgccgataatggtgcgctcatgcgc
tgttcgttcgaagaaacagttgaaattctgcttgaggctgctgcgttcggagagctcgac
gattgccgcggtgtgtcggagaacttgatccttggacagatggcgcccgccggaacgggt
gagttcgacgtctacctggaccagagcttgctcaacaccgtcgtgtccaacaatgcacgc
tacggccttatgggcgcggtcggcgcgaaggatgccatcatttccgacggtgctgccact
cagtatgacactggttctcccatggccagctcaccgtacatggctggtggcgaccccaat
tcgaccttctcgcctatgcaccagattggccaggagcctactggaggtcttaccgagtac
caggctaccactagtacctttggtggattcagtcccgcggctcgcagccccggcggctac
tctccaacaagtcccttcaatactagcccgacgtctccaggatactctccgtcttcaagc
tattcaccgacctctcctggcatcggcatgatgacctctcccggtttctcgcctgccagc
ccaacgttccaacccacgtctccggcctactcgcccacgtcgcctgcatacggccaagcg
tcgcccacctctccttcatactctccaacttcgcctgggttctcgccgacgtcgcctaac
tacagtccgacttcccccagctttagtccggcctcgccggcgttcagtccgacttcgccg
agctacagtcccaccagtcctgcgattggcggtgctcggcacctgtccccaacatcccct
acctctcccaagtacacaccaacttcgcctggttggtctcctacgagcccccagtcatac
tcgccgacttctcccaatttctctggctccccgacgtcccctacctctccagcttacagc
ccgacatccccggcgtacagccctacgtcgccgcgccagtga
DBGET
integrated database retrieval system
