Pectobacterium carotovorum subsp. carotovorum PC1: PC1_0205
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Entry
PC1_0205 CDS
T00934
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PC1_0205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pct03021
]
PC1_0205
03400 DNA repair and recombination proteins [BR:
pct03400
]
PC1_0205
Enzymes [BR:
pct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PC1_0205
Transcription machinery [BR:
pct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PC1_0205
DNA repair and recombination proteins [BR:
pct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PC1_0205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
ACT11265
UniProt:
C6DHR5
LinkDB
All DBs
Position
239453..243481
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDNVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGVEADKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEKFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacag
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggtcagtacggtttggaagctgcattccgttctgttttccccataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttgggcgagccagtattt
gacgttaaagaatgtcagatccgtggtgtgacgttctctgcgccgctgcgcgttaaactg
cgcctggtgatctacgagcgcgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgataacggtaccttcgtgatcaacggt
actgagcgcgtaatcgtgtctcagttgcaccgtagtccaggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggttggatttcgagtttgatccgaaggataacctgtttgttcgtatcgaccgt
cgccgcaaactgcctgcgaccattatcctgcgtgcgctgggttactccaccgagcagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataaattgcagatggat
ctggttcctgagcgcctgcgtggtgaaaccgcctcgtttgatatcgaagcgaacggtaaa
gtttatatcgaaaaaggccgccgtatcactgcacgccatatccgtcagttagagaaagac
ggtattgagcgcattgaagtgcctgttgaatatatcgctggcaaagttctgtccaaagac
tatatcgacgagagcaccggtgaactgatcggcgcagctaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggccacaaacgtattgagactctgttcaccaacgat
cttgatcatggtgcatacatgtctgaaaccgtgcgtgtcgatccgtcaaacgatcgcctg
agcgcactggttgaaatctatcgcatgatgcgtcctggtgagccgccaacgcgtgaagca
gcagaaacgctgttcgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgttacgtgatgagatcgaaggttctggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgctgtaaaagagcgtctgtct
ctgggcgacctcgatacgctgatgccacaggatatgatcaacgccaagccgatttcggct
gccgtgaaagagttcttcggttcgagccagctgtcacagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctctgcattgggcccaggtggtctgacgcgt
gaacgcgccggctttgaagtccgtgacgtacacccaactcactacggccgtgtttgtcct
atcgaaacgccggaaggtccaaacatcggtctgatcaactccctgtccgtttatgcgcaa
acgaacgagtacggtttccttgaaaccccatatcgtcgtgtgcgtgacaacgtggtgacg
gatgagatccattacctgtctgcgattgaagaaggtaacttcgttatcgcacaggcgaac
accaatttggacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggc
gagtccagcttgttcagccgcgatcaggttgaatacatggacgtttccacacagcaggtg
gtttccgtcggtgcatccctgattccgttcctggaacacgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaggccgttccgaccctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtggatgcatcccgtattgtaattcgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtttctctgggtgagccggtagaacgtggc
gacgttctggcagatggcccgtccaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttctgag
cgtgtagttcaggaagatcgctttacgaccatccatattcaggaacttgcctgtgtgtct
cgtgacaccaagttagggcctgaagaaattactgcggacatcccgaacgtgggtgaagca
gcactttccaaactggatgagtccggcattgtttacatcggtgcggaagtgaccggtggt
gacattctggttggtaaggttacgccgaaaggtgaaacccagctgacgccagaagaaaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagaattgcagattctggaagcgggcctgtttgcacgtatccacgctgtgctggtt
tccggcggcgtagaagccgacaaactggacaaactgccgcgtgagcgctggttggaactg
ggtctgactgatgaagataaacagaatcagttggaacagttggcagaacagtatgatgag
ctgaagcacgagtttgagaaaaaactcgaagctaagcgccgtaaaatcactcagggcgat
gatctggcaccgggcgtgctgaaaatcgttaaggtttatctggctgttaaacgtcagatc
caaccgggtgacaaaatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacattggtcagattctggaaacccacctgggtatggct
gcgaaaggtatcggcgagaaaatcaacgccatgctcaagcagcacgaagaagtgactaaa
ctgcgtgagttcatccagagagcctacgatctgggcgacgatgtgcgtcagaaagtcgac
ctgagcactttctcagacgaagaagttatgcgtctggctgaaaacctgaagaaaggtatg
ccaattgcaacgccggtattcgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattaccctgtacgatggacgtaccggtgagaaa
tttgagcgtcaggttacagtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcaattcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagaaatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaatcatcagatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaagagtaa
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