Pectobacterium carotovorum subsp. carotovorum PC1: PC1_0403
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Entry
PC1_0403 CDS
T00934
Name
(GenBank) Sigma 54 interacting domain protein
KO
K14414
transcriptional regulatory protein RtcR
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pct03000
]
PC1_0403
Transcription factors [BR:
pct03000
]
Prokaryotic type
Other transcription factors
Others
PC1_0403
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
AAA_16
AAA
AAA_22
NACHT
AAA_19
MCM
AAA_14
BrxC_BrxD
T2SSE
AAA_7
AAA_30
AAA_2
ABC_tran
TsaE
ATPase_2
AAA_29
Motif
Other DBs
NCBI-ProteinID:
ACT11459
UniProt:
C6DJP6
LinkDB
All DBs
Position
complement(459277..460860)
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AA seq
527 aa
AA seq
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MKRRVIIGVLGTTLDKRGKRENRWTKWRPTVGLCQQPDFPVDRLELLHQSRNEGMAQQVA
EDIAVVSPATQVTLQTVELRDPWNLEEVYSAFLDFASRYPFDTENEEYFVHITTGTHVVQ
ICWFLLTEARYLPAKLLQTAPGEKADRPAPQGIYAVIDLDLSRYATLTSRFQHEQERSVS
FLKSGIETRNSTFNALIDQIERVALRSTAPMLLTGPTGAGKSFLAQRIYQLRQSRHLVSG
RFVAVNCATLRGDNAMSTLFGHVKGAFTGALQARTGLLREADGGMLFLDEIAELGLDEQA
MLLKAIEEKHFLPFGSDKEVSSDFQLIAGTHRNLHEWIAQGKFREDLYARINMWTFPLPG
LAERREDIEPNIDYELQRFTRDHQTQIRFDKDARQRYLTFACSPQAAWRGNFRELGSSIA
RMATLAEQGRITVALVEEEVARLQASWRRDAPATALPPELANIDLFEQRQLETVLDVCRT
ANSLSEAGRQLFAVSRQQKQKPNDADRLRKYLARFGLSWEELKRGEG
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtcgcgtcatcattggtgtgctgggaaccacgttggacaaacgaggtaaacgg
gagaatcgctggacaaaatggcggcctaccgtcggcctatgccagcagccggattttccg
gtcgatcgactggagctgctgcatcagtcacgcaacgaggggatggcacagcaggtggca
gaggatatcgccgtggtgtcacccgctacgcaggtcacgcttcagaccgttgagttacgc
gatccttggaatctggaagaggtctacagcgcctttctggactttgcgagccgctacccg
ttcgatactgagaacgaagagtatttcgttcatatcaccacgggtactcacgtcgtgcag
atttgctggttcctgctgaccgaagcccgctacctgcccgccaagctgctgcaaaccgca
ccgggagagaaagcggatcgccccgcaccgcagggcatctatgccgttatcgatctggat
ctcagccgctacgcaacactcaccagccgcttccagcatgagcaagagcgctcggtctcg
ttcctgaaatcgggcatagaaacgcgcaacagcacgttcaacgcgctgatcgaccagatt
gaacgtgtcgcgctgcgttctaccgcgccgatgctcctgaccggcccgaccggtgcggga
aaatcctttctggcccaacgcatctatcagttacgccagtcccgccatctggtcagcggt
cggttcgtcgcagttaactgtgccacgctgcgcggcgacaacgcgatgtcgacattattc
ggtcatgtgaaaggcgcgtttaccggtgcgttacaagcaagaacgggactcttacgtgaa
gcggacggcgggatgctttttttggatgaaatcgctgaactcgggctggatgagcaggcg
atgttgctcaaggccattgaagaaaagcactttttaccgtttggctcggataaagaagtc
agcagcgatttccaattgattgccggcacacaccgcaacctgcacgagtggatcgcacag
ggcaaattccgtgaagatctctacgcccgtatcaatatgtggacctttcccctgccgggc
ttggcggaacggcgggaagacatcgaaccgaatattgactacgaactccagcgcttcaca
cgcgatcaccaaacgcagattcgcttcgataaagacgcacggcaacgctacctcaccttt
gcctgctcaccgcaggccgcgtggcgtggcaactttcgcgaactcggctcctccatcgcc
cgcatggcaacgctggcggaacaagggcgtatcaccgttgcactggtcgaggaagaagtt
gctcgcctgcaagccagttggcgacgtgatgcgccagcaaccgcgctaccgccagaactc
gccaacatcgatctgtttgaacagcgtcagcttgaaaccgtgcttgatgtttgccgcacc
gccaattcgctctccgaagccggccgccagctgttcgccgtttcacgccagcaaaaacag
aagcccaacgacgctgaccgactgcgtaagtatctggcacgttttgggctgagctgggag
gagttgaagcggggggaaggataa
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