Pectobacterium carotovorum subsp. carotovorum PC1: PC1_0647
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Entry
PC1_0647 CDS
T00934
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct03410
Base excision repair
pct03430
Mismatch repair
pct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PC1_0647
03430 Mismatch repair
PC1_0647
03440 Homologous recombination
PC1_0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pct03400
]
PC1_0647
DNA repair and recombination proteins [BR:
pct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PC1_0647
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PC1_0647
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PC1_0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ACT11702
UniProt:
C6D8Z4
LinkDB
All DBs
Position
749277..751031
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AA seq
584 aa
AA seq
DB search
MITQLRRRPLAEDIDLPDTVPPLLRRLYAQRGVKAAQELERSLSGLLNYRLLSGIDNAVD
LLQKTLAEKRCIVIVGDFDADGATSTALTVLALRSMGCVNVKYLVPNRFEDGYGLSPEVV
AQAAALGAEVIVTVDNGISSHAGVEDAHRRGITVLVTDHHLPGEILPDADAMINPNLPDC
QFPSKALAGVGVAFYLMMALFVRLRDSDWFTQPLFTQQGLVKPNLTELLDLVALGTVADV
VPLDANNRILVAQGLNRIRAGECRPGIRALLEVANRDASQLVSSDLGFALGPRLNAAGRL
HDMKIGVELLLSDDIVQARILANELNDMNQDRRDIEQGMQAEALHLCESLERTRTELPYG
LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDT
LYPGMMEKFGGHAMAAGLSLHEDRFEDFRQRFGELVGEWLDPSQLEGVVWSDGELVLPEL
DLLSTAEMLRYAGPWGQSFPEPTFDGRFRILQPRLLKERHLKAMFEPIGATGKVPLLDGI
AFNVDTTIWPDPSIKEVEIVYRLDINEFRGKRSVQLLIQHLWPR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgattacccaactccgtcggcgtccgctggcggaggacattgatttacctgacaccgtt
ccgcccttgctacgccgcctctatgcgcagcgcggcgttaaagcggctcaggagctggaa
cgtagcctgagtggtttactcaattaccggttgctaagtggtattgataatgcggtcgac
ctgctgcaaaaaacgctggctgagaagcgctgcatcgtcatcgttggcgattttgatgcc
gacggcgctaccagcacggcgcttactgtattagcgctgcgcagcatgggctgcgtgaat
gtgaaatatctggtgcctaaccgttttgaagacggttacgggctcagcccggaagtcgtg
gcgcaggctgctgcactaggtgctgaagtgattgtgaccgtggataacgggatctcttct
catgccggcgtcgaagacgcgcatcgccgtggtatcaccgtgctggtgaccgatcaccac
ctgccgggcgaaatcttgcctgacgccgacgccatgattaaccccaatctgcccgactgc
cagtttccctccaaggcgctggcgggcgtgggtgtcgcgttttatctgatgatggcgctg
ttcgtgcgcctgcgtgatagtgactggtttacgcaacccttgtttacgcaacaggggctg
gtgaaaccgaatctcaccgaattactggatttagtggcgctgggcacggtcgctgacgtc
gtgccgctggatgccaataaccgaattctggtggcgcaggggttaaatcgtattcgtgcg
ggtgaatgtcgtccgggtattcgggcgctgctggaagtggcgaaccgcgatgccagccaa
ctggtctccagcgatttaggctttgcgttaggcccacggctgaacgccgccggtcgacta
cacgacatgaagatcggcgtcgaattactgctcagcgatgacatcgtacaagcgcgcatc
cttgccaacgaactgaatgacatgaatcaggacaggcgtgacattgagcagggaatgcag
gcagaagcgctgcatctgtgcgaatcgctggaacgcacccgtactgagttaccatacggg
ctggcgatgtaccacccggagtggcatcagggcgttgtcggtattctggcgtcgcgtatt
aaagagcgttttcatcgcccggtgattgcctttgcacccgcgggcgacggcatgctgaaa
gggtcagggcgctccattgcgggtttgcatctgcgcgatgcgctggaacggctggatacg
ctgtatcccggtatgatggaaaaattcggcggacatgcgatggcggcaggattatctctg
cacgaagatcggttcgaggatttccgtcagcgcttcggcgagctggttggcgaatggctc
gatccgtctcaactggaaggcgttgtctggtccgatggtgaactggtactgccggaactg
gatctgctctcaacagcagaaatgctgcgttatgcggggccgtgggggcagtcattccct
gagccgacattcgatgggcgctttcggattctgcaaccccgtctactcaaagaacgtcat
ttaaaagcgatgtttgaaccgatcggcgcgacagggaaggtgccgttgttggatggcatc
gcgtttaatgttgataccaccatctggccggatccgagtatcaaagaagtggaaatcgtg
taccggctggatattaacgagtttcgcggtaaacgttcggtgcaattgttgattcaacat
ctgtggccacgctag
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