Pectobacterium carotovorum subsp. carotovorum PC1: PC1_0912
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Entry
PC1_0912 CDS
T00934
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PC1_0912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pct03400
]
PC1_0912
Enzymes [BR:
pct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PC1_0912
DNA repair and recombination proteins [BR:
pct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PC1_0912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ACT11962
UniProt:
C6DAF4
LinkDB
All DBs
Position
1050602..1054000
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AA seq
1132 aa
AA seq
DB search
MFRIYHSNQLDILKRLMVELIKRQPLADPFQQEVILVQSPGMAQWLQIELAGHFGIAANI
QFPLPGVFLWNMCRHVLPDIPKESAFSKDAMTWKLMHLLPDLLEQPDFSALNHYLQDDDN
QRKLHQLAGRVADLFDQYLIYRPEWIKAWQEGKQVDDLGGNQLWQSALWRALVDYTRELA
QPEWHHAILYQRFINALEQAKTCPKGLPPRVFICGISALPPIYLQALNALARHIDVHLLF
TNPCRHYWSDIQDYKFLAKLKARNRRLHRFDGVQTDETRPLFLDPGQAETLFNDDGNQLI
NNPLLASWGKLGRDNLYLLAELDNVQEVGAFVESDGENLLQTLQRDILELEDHAVVAVSH
ETQNSSMQKRLLALDDRSVDFHACHSPQREVEVLHDRLLAMMADDPQLMPRDVIVMMADI
DSYTPFIQAVFGNAPDKRYLPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLE
VPALAARFGIQEEGLRRLRLWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGY
AMDSQVGDWQGVLPYDESSGLIAELAGQLAELLMQIHQWRQRLSQPRVLVDWLPLCRELI
ETFFDADSETEAALALVEKQWQYVIGMGTMAHYPQQVPISRLRDELSRRLDQERLSQRFL
AGAINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMGRKIKRGDRSRRDDDRYL
FLEALLSAQYKLYISYIGRSIQDNTRRYPSVLVSELTEYIAQSYVLPGDETLDIDSSAER
VMKHLCREHSRMPFDADNFLPAPQPLSFAAEWLAAANRKGEAQPDFDREALSERTTDSDV
SLDDLKRFYRHPVRAFFQLRLGVSFMLHSDELLDEEPFVVDSLNRYQLNSELLNTLINEG
DTEKLYRRARAAGELPYGAFGEIYWQEQQQEMAQLAARVRDELTPSLSVSREVDILLDGV
RVSGWLNQVQPDGLLRWRPGTLSMKDGITLWLEHLAYCATGGQGESRLYGREDTAWRFAA
LSETQAREHLALMLEGYRRGMSKPLLLLNKAGSAWLAECYDRESDSLRSDEETQNKARAR
LLQAWQGNMGMRGEGEDYYLQRIIRELDEKRMNEVIEAAQIWLLPPFRSNLA
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaatctatcactccaatcagttggatatcttgaaaagactgatggttgagttg
ataaaacgtcagccgcttgcagatcccttccagcaggaagtgattttggtgcaaagtccg
gggatggcgcagtggctgcaaattgagttggctgggcacttcggtattgctgccaatatc
caattcccgctgcccggtgttttcttgtggaatatgtgtcgccacgtgctgccggatatt
ccaaaagaaagcgccttcagcaaggatgcaatgacgtggaagctcatgcatttgctgccc
gatttactggaacaacctgatttttcggcacttaaccactatctgcaggatgatgataac
cagcgtaagctgcatcagcttgccgggcgcgtagcggatcttttcgatcaatacctgatt
tatcgccccgagtggatcaaggcatggcaagaagggaaacaggttgacgatctcggcggg
aaccaactgtggcagtctgcgctgtggcgtgcgctggtggactacactcgcgaactggcg
cagcccgaatggcaccatgcgattctgtatcaacgctttattaatgcgttagagcaggca
aaaacatgtccgaaaggcctgccgccacgcgtttttatctgtggtatctcggcgttacct
cccatctatctacaggcgttgaacgcactggcgcggcacattgacgtgcatctgctattt
accaatccttgtcgccattactggagcgatattcaggactataagtttctggcgaagcta
aaagcccgcaaccggcgcttgcatcgctttgacggcgttcagacggatgaaacgcgtccg
ttatttctcgatcctggacaggcagaaacgctgttcaatgacgacggtaaccagttgatt
aataatccgctgctagcatcgtggggaaagctggggcgcgataatctttatctgctggct
gagttggataatgtgcaggaggtcggtgcctttgttgagtcggatggtgaaaatctgctg
caaaccctgcagcgcgatatccttgagctggaagaccacgcggtagtcgcggttagtcac
gagacgcagaacagcagcatgcaaaagcgtctgctggcgctcgacgatcgttcggttgat
tttcacgcctgccatagcccccagcgtgaggttgaagtgcttcacgaccgcttgctggct
atgatggcggacgatcctcaactgatgccgcgtgacgtcattgtgatgatggcggacatc
gacagctatacgccgtttattcaggcggtatttggtaacgcgccggataagcgttacctg
ccttttgccatttccgatcagcgtgcgcggcatgcacatcctgccttgcaggcggtaatc
agcctgctggatttaccgaccagtcgttttacggcggaacaggttctggcattgcttgaa
gtccccgcgttagccgctcgtttcggtattcaggaagaagggctacggcgtttgcgtctg
tgggtggtggaatccggcgtgcgctggggattggatgacgacaacgtgcgcgatctgatg
ctgccgccaacgggccagcatacgtggcgtttcggtctgacgagaatgctgttgggctat
gcgatggacagtcaggtcggcgactggcagggcgtgctgccttacgatgaatccagcgga
ttgattgcggaactggctggtcaactggccgaactgctgatgcagattcatcagtggcgc
cagcgcttgtctcaaccacgagtgcttgttgactggctaccgctatgtcgagagttgatc
gaaactttctttgatgctgacagcgagaccgaagcggcgttggcgttagttgaaaaacag
tggcagtacgtgattggcatggggacgatggcgcattatccacagcaggtgccgatttcc
cggttacgtgatgaattgtcgcggcgtctcgatcaggaaaggctcagccagcgttttctg
gccggtgcgatcaacttttgtacgctgatgccgatgcgttctatcccattcaaggtcgtg
tgtttgctggggatgaatgatggtgtctatccccgaacgttgccgccgctcgggttcgat
ctgatggggcggaagatcaagcgtggcgatcgtagccgacgtgacgacgaccgctatctg
ttccttgaagcgctgctgtcggcgcagtacaaactttatatcagctatatcgggcgctcg
attcaggataatacacgccgctatccttccgtgttggttagcgaactgacggaatatatc
gcgcaaagttacgtcctgccgggggatgaaacgctggatattgatagcagcgcggaacgg
gtaatgaagcacctctgccgtgaacatagccgtatgcctttcgatgcagataactttctg
ccagcaccgcagccattgagctttgcggcagaatggctggcggcggcgaaccgaaaaggg
gaggcccagcctgatttcgatcgtgaagcgttgtccgaaagaacaactgatagcgatgtg
agtctggacgatctgaagcgtttttatcgtcatcctgtgcgagccttttttcaactgcgg
cttggcgtgagtttcatgctacacagcgatgaactgctggatgaagagccctttgtggtt
gatagccttaaccgctatcaattgaatagtgagttgcttaataccttgattaatgaaggc
gatacggaaaaactgtatcgccgtgccagagccgcgggtgaattgccctatggggcgttt
ggcgaaatttactggcaggaacaacagcaggagatggcgcaactggctgcgcgtgtgcgt
gatgaattaacgccctcgctgtcggtgagtcgggaagtcgatatcctccttgacggcgtg
cgcgtgagtggttggctaaatcaggtgcagccggatggtctgctacgctggcgccccggc
acgctttccatgaaagacggcattacgctgtggttggaacaccttgcctactgtgcgacg
ggggggcagggggaaagccggttgtatgggcgggaagataccgcgtggcgctttgcagcc
ctgtcggaaacgcaggccagagaacatcttgctctgatgttggaggggtatcggcgggga
atgagcaagccgctgttactgcttaataaagcgggaagcgcctggcttgctgaatgttat
gatcgcgaaagcgatagcctgcgctcggatgaagagacgcaaaacaaggcgcgagcccgc
ttactgcaagcctggcagggtaatatgggaatgcggggggaaggtgaggattattacctg
cagcgtattattcgtgagttggatgaaaaacgaatgaatgaggtgattgaagcggcgcaa
atctggctactgccaccgttccgctctaatctggcgtga
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