Pectobacterium carotovorum subsp. carotovorum PC1: PC1_1528
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Entry
PC1_1528 CDS
T00934
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC1_1528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pct03019
]
PC1_1528
Enzymes [BR:
pct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC1_1528
Messenger RNA biogenesis [BR:
pct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC1_1528
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACT12571
UniProt:
C6DDV9
LinkDB
All DBs
Position
1782000..1783433
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AA seq
477 aa
AA seq
DB search
MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLNSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP
AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGNRGGGGARNGSPRAQSGAPRGQSER
SQGQSERRSADGNRQPRKSGGNSDSPWGGNKGNGGKGNGEGQRRAPRPQNRSKPADK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgcgcgattgacgagcagggt
tatcgcgatcctacccctgttcagcgtcaggctatccctgtcgtgctggaagggcgcgat
ttgatggccagtgcccaaacgggtacgggtaaaacggcgggctttacgctgccattattg
caactgctgaacagccgtgaagcgcagaataaagggaaaggccgtcgtccggttcgagcg
ctgattctgacgccaacccgtgagctggcagcgcagattgatgagaatgtgaaggcgtat
agcaaatatctgcgcctgcgttcactggtcgtattcggtggggtgagcattaacccacag
atgatgaaactgcgtggcggcgtggatattctggtggcgacgccagggcgtctgctcgat
ctggaacaccagaacgccgttgacctgtcacagattgaaattctggtgctggatgaagca
gaccgtatgctggatatgggcttcattcacgatattcgtcgtgtactggcgaagctgcct
gctaaacgccaaaacctgctgttctccgcgaccttctctgatgagatcaaagcgctggcg
aacaaactgctgaccaatccagcctcggttgaagtcgtgcgtcgtaatacgccgtctgaa
ctggtgacgcagcacgtgcattttgtcgataagcgccgcaagcgtgaactgctgtcacag
ctgattggtgaaaacaactggcagcaggtactggtctttacccgaaccaaacacggcgct
aaccatcttgctgaactgctggaaaaagacggtattaccgctgcggctatccacggtaat
aaaagccagggggcgcgtacccgtgcgctggcaaacttcaaagacggcagcattcgcgtg
ctggtcgcgaccgatattgccgcgcgtggtctggatatcgatcaactgccgcacgtggtg
aattatgagctgccaaacgtgccggaagattacgttcaccgtatcggtcgtaccggtcgt
gcggaagcgacgggcgaagcgctgtcgctggtgtgtgtggatgagcacaagctgctgcgt
gacatcgaacgtctgctgaagcgtgaaattccgcgtatcgctatcgaaggttacgagccg
gatccgtctatcaaggctgagccgattgtgaatggtcgtcagggcaaccgtggcggcggc
ggggcgcgcaatggatcgccgcgcgcgcagtctggtgcgccacgcggccagtccgagcgt
agtcaaggtcagagtgaacgtcgctcggccgatggcaatcgtcagccgcgtaaatcaggc
ggcaatagcgatagcccgtggggtggtaataaaggcaacggcggcaaaggcaatggcgaa
gggcagcgccgcgcgccgcgtccgcaaaaccgcagtaaaccagcagacaagtaa
DBGET
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