Pectobacterium carotovorum subsp. carotovorum PC1: PC1_1936
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Entry
PC1_1936 CDS
T00934
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct00061
Fatty acid biosynthesis
pct00071
Fatty acid degradation
pct01100
Metabolic pathways
pct01212
Fatty acid metabolism
pct02024
Quorum sensing
pct04146
Peroxisome
Module
pct_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
PC1_1936
00071 Fatty acid degradation
PC1_1936
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PC1_1936
09145 Cellular community - prokaryotes
02024 Quorum sensing
PC1_1936
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pct01004
]
PC1_1936
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pct04147
]
PC1_1936
Enzymes [BR:
pct01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
PC1_1936
Lipid biosynthesis proteins [BR:
pct01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
PC1_1936
Exosome [BR:
pct04147
]
Exosomal proteins
Exosomal proteins of breast milk
PC1_1936
Exosomal proteins of breast cancer cells
PC1_1936
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
AMP-binding_C_2
AMP-binding_C_3
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-ProteinID:
ACT12977
UniProt:
C6DG34
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All DBs
Position
2229638..2231356
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AA seq
572 aa
AA seq
DB search
MPLKKYLGSDVLEKIWLSRYPADVPAEIDPDRYSSLIEMFETSVKRYADRPAFVNMGEVM
TFRKLEERSRAFAAYLQNQLKLQKGDRVALMMPNLLQYPVALFGVLRAGLVVVNVNPLYT
PRELEHQLKDSGASTIVIVSNFAHTLEKVVHNTAVKHVILTRMGDQLSTAKGTLVNFVVK
YIKRLVPKYHLPDAISFRRVLQEGRRQQYIRPDIINTDLAFLQYTGGTTGVAKGAMLTHR
NMLANLEQCKGAYGAILQEGNELVITALPLYHIFALTVNGLLFLELGGKNLLITNPRDIP
AVVKELKQYPFTAITGVNTLFNALLNNKEFHELDFSTLRLAVGGGASVQQAVAERWEKLT
GKHLLEGYGLTESSPLVAVNPYDLKHYSGSIGLPVSSTDVKIIDDDGNDAGPGESGELWV
RGPQVMLGYWQQPAATDEVLKDGWLATGDIVTSDDEGFLRVIDRKKDMILVSGFNVYPTE
IEDVISRHPKVSESAVIGVANEVSGEAVKAFVVRRDNSLTKEELITHCRRNLTGYKVPKE
IEFCDDLPKSNVGKILRRELRDDKKVKKDAAA
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgccactaaaaaaatatctcgggagtgacgtcttggaaaaaatttggttatcacgctat
ccggcggacgtgccggcggaaatcgatccggatcgctattcgtcgttgattgaaatgttc
gaaactagcgtgaagcgttatgccgatcgacctgccttcgtcaacatgggtgaagtgatg
acgtttcgtaagctggaagagcggagtcgggcgtttgcggcctatctgcaaaaccagctt
aaattgcaaaagggcgatcgtgtcgcgttgatgatgcccaatctactgcaatatcccgtt
gcgctgtttggcgtgttgcgcgcgggtctggtggtggttaacgttaacccactgtatacg
ccgcgtgagctggaacatcagctaaaagacagcggggccagcacgatagtcatcgtgtct
aacttcgcgcatacgctggaaaaagtcgttcataacacggcggtgaaacacgtcatcctc
acccgtatgggagatcagctctccacggcgaaagggacgctggtcaatttcgtggtgaaa
tatattaagcggctggtgcctaagtatcatctgccggatgcgatatcgttccgtcgtgtt
ttgcaggaaggacggcgtcagcagtatattcgccccgatattatcaataccgatctggca
tttctgcaatataccggtggcaccacgggcgtcgctaaaggcgcgatgctgacgcaccgc
aatatgctggcgaatcttgaacagtgtaaaggggcatacggcgctattctgcaagaaggg
aatgagctggtgatcacggcgttgccgctctatcatatttttgcgctcacggtgaacggc
cttttgttccttgaattgggcggtaagaacctgttgatcactaacccccgcgatattccg
gcggttgtgaaggaactgaaacaatacccgtttacggctatcactggcgttaatacgtta
tttaacgcactgcttaacaacaaagaattccacgagctggatttctcaacgctgcgttta
gcggtcggcggtggagcatcggtacagcaagcggtggcagaacgttgggaaaaactaacg
ggtaaacatctgcttgaaggatatgggttaacggaaagttcacctctggtggccgtaaac
ccttacgatctcaaacattacagcggcagtatcgggctaccggtgtcatccacggacgtc
aaaatcattgacgatgacggcaacgatgctgggccgggtgagtctggcgagctgtgggtg
cgcgggccgcaggtgatgttagggtattggcagcagcctgccgcgacggatgaagtgtta
aaagacggctggctggcaacgggtgacattgtcacctctgatgatgaagggttcctgcgt
gtcatcgaccgcaagaaagatatgatcctggtgtccggctttaacgtctatccgacggaa
attgaagatgttatcagccgtcatcccaaagtgtccgagtcagcggtgattggggtggcg
aatgaggtatccggtgaagcagtcaaagcctttgtggtcaggcgtgataactcgttaacg
aaagaggaactcattacccactgtcgccgaaatcttaccggttataaagtgccgaaagag
atcgaattctgcgacgatttgccgaaatctaacgtggggaaaatcctacgccgcgaattg
cgcgacgataagaaggtgaagaaagacgctgccgcctga
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