Pectobacterium carotovorum subsp. carotovorum PC1: PC1_1937
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Entry
PC1_1937 CDS
T00934
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pct03016
]
PC1_1937
Enzymes [BR:
pct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PC1_1937
Transfer RNA biogenesis [BR:
pct03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PC1_1937
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACT12978
UniProt:
C6DG35
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All DBs
Position
2231567..2232691
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AA seq
374 aa
AA seq
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MNYQLITSNIGLQQVCAQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRHLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPTSLGELSSLGLSGPEIRYHGKTLLDCVAQMDGISDADCPPPVINLIDY
PGYKKAFKDIKALVQRVSEQSGLSAELLASRRQINRLLNWHWKLNGQDAGTPEMLSGWRG
QLYGDELRDIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccaacatcgggttacaacaggtttgcgcccaggcgcga
cgttttccgcaggtggcattggacacggagttcgtcagaacccgcacgtattacccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcacttattgacccgctaacgatt
accgactgggctccttttcaggcgttactgcgtgatgagcaggtcacaaaattcctgcat
gcgggcagcgaagatctggaagtgtttctcaatgcgtttggaacactgccggtgccgttc
attgacacacagattctggccgcatttttaggtaagccgctttcctatggcttcgctgcg
ctggtggcggactatatgggcgtgacgctggataaaagcgagtcgagaacggactggctt
gctcgcccgttgagcgaaaaacagtgcgattacgcggccgccgatgtgttctacctgttg
ccaatggccgcgcagttagtggcggatacggaagccgcagggtggatgaacgctgcgttg
gacgaatgtctcctgctttgtcagcgtaaacaggatattttggcaccggcgctcgcctat
cgcgaatttggcaatgcctggcagttgcgtggccggcatctggcttgcctacagcgtctg
gctgagtggcgcttgcgtaaagcgcgtgagcgagacagcgcggtgaattttgtcgtacgt
gaagagaacctgctgcaggtggcgcgttgtttgccaacttcgctgggtgaactgagctca
ctggggctgagcggcccggaaattcgctaccacgggaaaacgctgctggactgtgttgca
caaatggacggtattagtgacgcggattgcccgccaccggtcattaatttgatcgactat
cccggctataaaaaagcgtttaaagatatcaaagcgctggtacagcgcgtgagcgaacag
agtggattatccgccgagttattggcatcacgtcgtcaaattaaccgtctgctgaactgg
cactggaaattaaatgggcaagacgcagggaccccggaaatgttatctggctggcgcggt
cagttatatggcgatgaactacgtgacattgtgcaaggctattaa
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