Pectobacterium carotovorum subsp. carotovorum PC1: PC1_2288
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Entry
PC1_2288 CDS
T00934
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pct03019
]
PC1_2288
Enzymes [BR:
pct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PC1_2288
Messenger RNA biogenesis [BR:
pct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PC1_2288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
T2SSE
NACHT
PhoH
ResIII
CCDC32
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACT13326
UniProt:
C6DJ56
LinkDB
All DBs
Position
complement(2630881..2634768)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLHRRLQGAAKVSSPQAQAAIAQEIEGEIVAARQKVENR
RASRPAIHYPEQLPVSQKKDEILEALRNHQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITLAENGHYR
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMVITAALSIQDPRERPLDKKQASDEKH
RRFADKDSDFLAFVNLWDYLREQQKTLSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCSLLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSEPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPTLAREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVISSRHFDKWWKVASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDEKNRTQREGKDLNALKDQLKDKVQQTLSSVADDGLEQRGLHVWSFGSL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLIETSGGPVWQEEAFQQLHEKVRAEL
NDTVVDIAKQVEQILTAVFTINKRLKGRVDMAMALALSDIKSQMNSLVFRGFVTENGWQR
LPDVLRYLQAIERRLEKLAQDVHRDRAQMLKVEQVQQAWQQWWNKLPAERRDDEDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatcgg
cagcgtctgcaccgccgcttgcagggcgccgcgaaggtcagcagcccgcaggctcaggct
gcgatcgcgcaggaaattgagggggagattgtcgcggcgcgccagaaagtcgagaatcga
cgggcaagccgtccggcgattcactaccctgaacagcttcccgttagccagaaaaaagac
gagatactggaagcactgcgtaatcatcaggtgattatcgtcgcgggcgagacggggtcg
gggaagaccacgcagttaccgaaaatctgtctcgaactggggcgtggcgtgcacggcctg
attggccatacgcagccgcgtcgtctggcggccagaaccgtcgctgaccgcattgctgcc
gagctggaaacgccgctgggcggcagcgtcggctataaagtccgctttaacgatcaggtg
agtgacaatacgctggtcaaactgatgacagacggtatcttactggctgaaattcagcag
gatcgcctgttgatgcagtacgacacattgatcatcgatgaagcgcacgaacgcagcctg
aatatcgatttcatcatgggctatttgcgccagctgttgccaaagcgccctgatttaaaa
gtgattattacgtcggctaccatcgatccgcagcgcttctcccgccactttaataatgcc
ccgatcattgaagtatccggccggacctatccggtggatgtgcgctatcgtcctgtggtg
gaagatgccgacgacagcgaacgcgatcagctacaggccatttttgatgcggtagacgag
ctgacgcgcgaagggccgggggatattctggtcttcatgagcggtgaacgtgaaatccgc
gataccgcagaagcgctgacccgtctggacttgccgcataccgaaattctcccgctgtac
gcgcgtctgtcgaatcaagagcagaaccgcgtctttcagtcacatcatggccgccgtatc
gtgctggcgaccaacgtagcggaaacgtcattgaccgtgccggggattcgttatgtgatc
gatccgggcacggcgcgtatcagccgctacagcttccgtaccaaagtccaacgcctgccg
attgagcccatctcacaggcatcggcgaatcagcgtaaagggcgctgtggtcgtgtggcc
gccggggtatgtatccgcctctattccgagcaggatttcttgtcgcggcctgaatttacc
gatcctgaaattttgcgtaccaatctggcttccgtcattctgcaaatgacgtcgctgggg
cttggcgatatcgctgcgttcccgtttgttgaagcgccggataaacgcaatattcaggac
ggcgtgcggctgctggaagagctaggtgccattacgttggcggaaaatgggcattatcgc
ctgacgccgcaggggcagcagttggcgcaattgccgatcgatccacgtttggcgcgaatg
gtgctggaagcgcgtaaaaccggctgtgtgcgtgaagtgatggtcatcactgccgcgctg
tcgattcaggatccgcgcgaaagaccgctggataagaagcaggcatcggatgagaaacat
cgccgttttgccgataaagactccgattttctggctttcgtcaatctgtgggactacttg
cgtgagcagcagaaaacgctgtcttccagtcagttccgccgtcagtgccgcaccgatttc
cttaactacctgcgcgtgcgcgaatggcaagatatttacacgcagctgcgtcaggtggtg
aaagaactggggctgccggtcaacagcgaaccggccgattacctgagtattcactgctcg
ctgctcaccgggctgttgtcgcatatcgggcagaaagatattgagaaacaggagttcagc
ggcgcgcgtaacgcccgatttgcgattttccccggatcggggctattcaaaaagccgcct
aagtggacgatggtggctgaactggtggaaaccagccgcctgtggggacgtattgccgcg
cgtattgaacccgagtggatcgaaccgctagcccagcatctgattaagcggagctacagc
gagccccattgggaaaaagcacagggtacggtgatggcgcaggagaaggtgacgcttttc
gggctgccgattgtggcggcgcgcaaggtgaactacagccaaatcgatccaacgctggcg
cgtgagatgtttatccgccatgcgctggtggaaggcgactggcaaacgcatcacgccttt
ttccgcgctaacctcaagctgttggcggaagtagaagatttagagcacaaatcgcgccgc
cgcgacattttggtggatgacgagacgctgtttgctttctacgatcagcgcttgccgcac
gatgtcatttcgtcgcgccactttgacaagtggtggaaagtcgccagccgggataatgcc
gacctgcttaattttgaaaagagcatgttgattaaagacggcgcggagaaggtgagcgcg
ctggattatccgaatttctggcatcagggcagtctgaaattacggctgtcctatcagttt
gagccgggtgcggatgcggatggcgtcacggtgcatattccgctgcccatcctcaatcag
gtgcgtgaagagggcttcgagtggcagatccccggcgtgcggcgcgaactgacgatcgcg
ctgattaaatccttgcccaaaccattacgccgtaactttgttcccgcgccgaactacgcc
gaagcgtttctggcgcgcaccacgccactagagaaagggctattggatgcgctggagcgt
gagttacggctcatgacgggcgtgacggtgccgcgcgaagcgtggcagtgggatcaggtg
cccgatcatctgaaaatcacgttccgtgtcatcgatgagaagaatcggacgcagcgggaa
ggcaaggacctgaacgccctgaaggatcagctcaaagataaagtgcagcagacgctatca
tccgtggcggatgatgggctggagcagcgcggtctgcacgtctggagcttcggttcattg
ccggactgctatgagcagaaacgcggcggttactcggttaaagcctatccggcgttggtg
gatgaaaaggatagcgtggcaattcgtctgttcgatacgccgcaccagcaacagcaggtg
atgcggcagggactacgtcgcctgttgctgttgaacattccatcgccgatcaaatatcta
catgaaaagctgccaaacaaggcgaagctcggtctctatttcaacccgtacggcaaagtg
ttggatctcatcgatgactgtatcgcctgcgcggtggataaactgattgagacatccggc
ggtccggtctggcaggaagaagccttccagcaactgcatgaaaaagtgcgtgcggagctg
aacgatacggtggtggatatcgccaaacaggttgagcaaatcctgacagccgttttcacc
attaataaacgtctgaaagggcgtgtagacatggcgatggcgctggcgttaagcgatatc
aagagtcagatgaacagtctggtgttccgtggctttgtgaccgaaaacggctggcagcgc
ctgccggacgtgctgcgctatctgcaagcgatagagcgacgtttggagaagctggcacag
gatgtccaccgcgatcgggcacaaatgttgaaagtggagcaggttcaacaggcgtggcag
cagtggtggaacaagctgccagcggagcgacgtgacgatgaggacgtgaaagcggtgcgc
tggatgcttgaagaattgcgcgtcagctactttgcccagcagctcgggacgccgttcccg
atctcggataagcgcgtattgcaggcgatggagcaggtcgaaggctaa
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