Pectobacterium carotovorum subsp. carotovorum PC1: PC1_2357
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Entry
PC1_2357 CDS
T00934
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pct03016
]
PC1_2357
Enzymes [BR:
pct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PC1_2357
Transfer RNA biogenesis [BR:
pct03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PC1_2357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ACT13388
UniProt:
C6DK05
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All DBs
Position
2712676..2714610
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKDREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKDAIPCRAARDVTH
TFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERAAPDVEAT
ERHDGELVREDLTALSFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVDAGSE
LDKIARQRAFTNYLPGFNIPMLPRSLSDDICSLRPDERRPVLACRVTIAADGALGDDIHF
FAAWIESKAKLAYDNVSDWLEEQGEWQPQNDAIAEQIRLLHRVCLARSEWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEEAMIAANVCAAIVLRDKLGFGIYNVHNGFD
PVSIDQAVTVLDTHGVQADAQTLLTLEGFCKLRRELDAQPTQFLDSRIRRFQSFAEVSIT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLSDKAGTDVRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQEMGTLAVKGDVVYRQGDTLDVVIAEVRLETRSVVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggcaccgataaaggatttggctttcttgaagctgacgga
caaaaaagctatttcattccccctccacatatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagatcgggaaattgtcgaacctgaaacgcttatcgaa
cccttcctaacccgatttgttggccgcattcataaaaaagacgatcgtttatccattacg
cctgatcatccactgctaaaagatgcgattccctgccgtgctgcacgcgatgtgacgcac
acttttcaggaaggcgattgggcggtggcagaaatgcgccgtcacccgctgaaaggcgac
cgtggatttcatgctgaactgacgcaatacattactacgggcgacgacccgctggtgccg
tggtgggtgacgttgtcacgtcataatctggagcgtgctgcaccggacgtggaagcaacg
gagcgccatgacggtgaactcgtccgcgaagatctgaccgcgctgagctttgtcactatc
gacagcgccagcactgaagatatggacgatgcactgtacgtacaggacaacggcgatggt
tctctacaattaactatcgcgattgccgatccgaccgcctatgtcgacgcgggtagtgag
ctggacaagattgcacgccagcgcgccttcaccaactatctgcccggcttcaacatcccg
atgctgccgcgctcgctgtccgatgatatctgttcactgcgcccggacgagcgccgtcct
gtcctcgcctgccgtgtgacgattgctgccgatggtgcgctgggtgacgatattcacttc
tttgccgcctggatcgaatccaaagccaagctagcgtatgacaatgtctccgactggctg
gaagaacaaggcgaatggcagccgcaaaatgacgcgattgctgaacaaatccgtttgctg
caccgcgtctgtctggctcgcagcgaatggcgcactacccatgcattggtatttaaagat
cgtcctgattaccgcttcctgctgggtgaaaaaggcgatgtattggatatcgtggttgaa
caccgccgcatcgccaaccgtatcgttgaagaagccatgattgccgccaacgtctgtgcg
gccattgtgctgcgcgataagctgggctttggtatctataacgtccataacggcttcgat
ccggtatcgattgatcaggccgttaccgtgttggacacccacggtgttcaagccgacgca
cagacgctgttgacgctggaagggttctgtaagctgcgtcgtgagctggatgcccaaccg
acacagttcctggatagccgtattcgccgcttccagtctttcgcggaagtcagcatcaca
ccggggccgcactttggtctggggctggaagcctatgccacctggacatcccctatccgt
aaatacggcgatatggtgaaccaccgtttgctgaaagcggttatcaccggacaggcagcg
gaaaaaccgcaggacgatgttacggtacagttggcagaacgccgtcgccttaaccgtatg
gccgagcgtgatgtcggcgattggctgtacgcccgctacctcagcgacaaagcgggtacc
gatgtgcgtttcaacgcggaaatcattgatgtcacacgcggcggcctgcgtgtccgcctg
ctggataacggcgcagtcgcatttatcccatcctcctttatccacgccgtgcgcgatgag
ctggtgtgtagccaggaaatgggcaccctcgcggtgaaaggcgatgtggtttatcgtcag
ggtgatacgctggacgtcgtcatcgcggaagttcgtctggaaacccgcagcgtcgtggca
aagccagccgcataa
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