Pectobacterium carotovorum subsp. carotovorum PC1: PC1_2843
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Entry
PC1_2843 CDS
T00934
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pct03009
]
PC1_2843
Enzymes [BR:
pct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PC1_2843
Ribosome biogenesis [BR:
pct03009
]
Prokaryotic type
rRNA helicases
PC1_2843
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ACT13872
UniProt:
C6DAN8
LinkDB
All DBs
Position
complement(3216576..3217958)
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AA seq
460 aa
AA seq
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MSTTSFSSLSLPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGI
GLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL
VHAPHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQ
TLLFSATYPEEIEQISARVQRQPQRFEIADDVKESAIEQRFYETTKEQRLPLLISILGHH
QPSSCVVFCNTKRDCQSVFDALDMRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKELELVVNFELAFDPEVHVHRIGRTGRAGMQGLAVSLCTPQEMNRANLIEDY
LGMRIKWAAADSLDRTGEVTLEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGK
IDMFPLHAYVAIRKASAKRALQQLQKGKIKGKSCKARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaacctctttttcttccctctcgctgccagcagagcagttatccaatcttaat
gaactgggttataccgacatgacgcccgttcaggcggcgacgttgccagccgttctgagt
ggtgcagatgtgcgtgccaaggcgaaaaccggtagcggtaaaacagcggcgttcggcatt
gggttactggatcgtattgtcgtgagcgactttactacgcaggcgctggtgctgtgcccg
acgcgtgaactggccgatcaggtcagcaaagagctgcgtcgtctggcccgttttgcgcaa
aacattaagatcctgacgctatgcggcggtcagccgatggggcagcagctcgattctctg
gttcacgctccgcatattgttgtcgggacgccagggcgtatccaggatcatttacgtaag
cagtcactgtctctggatagcctgaaagtgctggtgctggatgaagcagatcgcatgctg
gacatgggtttcaccgatgcgattgatgatgtgatttcctatacgccgtccgatcgtcaa
accttgctattttctgccacgtacccggaagagatcgaacagatcagtgcgcgcgttcag
cgtcaaccgcagcgtttcgagattgcagacgacgtgaaagagtcggccatcgaacaacgc
ttctacgagacgacgaaagagcagcgattgccactgttgatttctattctgggtcatcat
cagccttcgtcctgtgtcgtgttctgtaacaccaaacgcgactgccaaagcgtgtttgac
gcgctggatatgcgtgggattagcgtattggcgctgcatggcgatctggaacagcgcgat
cgcgatcaggttctggtgcgttttgctaaccgcagttgccgcgtgctggtagcaaccgat
gtggcggctcgtgggcttgatatcaaagagcttgagctggtcgtgaattttgagctggct
ttcgatcctgaagtgcacgttcatcgtattggcagaacgggccgtgcgggtatgcagggt
ctggctgtcagcctgtgtacgccacaggaaatgaaccgcgctaatctgattgaagattat
ctcggtatgcgaattaagtgggctgcggcggatagccttgaccgtactggcgaggttacg
ctggaacctgagatgatgacgctgtgtattgatgggggcagaaaagcgaaaatccgccct
ggcgatatcctcggcgcattaaccggcgatgcaggattaaccgcggcagaagtggggaag
attgatatgtttccgctgcatgcttatgtcgctatccgtaaagctagcgctaaacgcgca
ttgcagcagctccagaaaggtaaaatcaaaggaaaaagctgtaaggccagattgttaaag
taa
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