Pectobacterium carotovorum subsp. carotovorum PC1: PC1_2863
Help
Entry
PC1_2863 CDS
T00934
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct00040
Pentose and glucuronate interconversions
pct01100
Metabolic pathways
pct02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PC1_2863
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PC1_2863
Enzymes [BR:
pct01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PC1_2863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_43
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
ACT13892
UniProt:
C6DAQ8
LinkDB
All DBs
Position
complement(3238018..3239586)
Genome browser
AA seq
522 aa
AA seq
DB search
MFRAVIGTGRLRTCAVAIAFSGLVLSGCDNSQKPLEEAAPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPLYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYADAEYYKTKPNKTTFDFDLYVKAFDQDYMAQLKATADAGGSDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTSILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDASDGDKGNWNARYDAVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDAADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAVGMGFDSSILSESNVFNFQGGGA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKAAAANSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSLAVVEKYVLENAGAGKLEIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattgggactggtcgtttacgtacctgtgcggtagctattgccttt
tctgggctcgtgctttccgggtgtgataatagtcagaaaccactggaagaagcggctccg
ccagatttgcaggtgaaaacggcaccgtttggctgggctgcgcaatatcagaatacggat
ggtaagttttatgcaacgacggggggcgaaggcgcacatgaaaatagcatttatgtcgtg
accagccgccaggaattaaaagatgcgttaaataatatacgcagtcccctttatatcgca
ggcgatgccgatgcggagttgaaggcaaagttagagcctaaaattatctattggcaaggc
actatccgcggcgacgatttaggtaatgggcgctatgcggatgctgagtattataaaacc
aagccgaataaaacaacgttcgattttgatttatatgtcaaagcgttcgatcaggactat
atggcgcagttgaaagcgacggcggatgcgggtggcagcgatgcggcggcggctagtgcg
gaactgagcctgcttaagaaacaaaatggtcaacgttcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccgccgaatacctcgattttaggcgtaggtagcgaagcg
aagctggtggaaggttatttatccctcaacaccctaagtcatacgtttggcaaaactgat
aacagcaacatcattatccgtaatattacctttcaggcgccgcgcgactttgccccagca
tgggatgccagcgacggcgataaagggaactggaatgcccgttatgatgccgtctcgatt
aatgccagcaaaaatgtttgggttgatcactgcacctttacagatggtgaacatcctgac
tatcaggaaccggtgttatttggcaaacatatccaacgccatgatggcctgctggatata
gaagacgctgccgattatctgacgatttcttacaacattttcgctcagcatgacaaaacg
gtattaattggctccggtgacggtgataaaggggaatatcgaatcacttttgaagggaat
ttatgggacaacagcgtgcagcgttcgccgcgagtgcgctttggtcaggtgcatttgctc
aataattaccatcgcggggcaacggacacgaattaccccattctgtatgccgttgggatg
ggattcgactcctccattctttccgaaagtaacgtgtttaatttccagggcgggggagcg
gatgaaaagttgattatcggcgcctacaagggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattagacaaatgcagcgcattg
caagagaccgagaaggccgctgccgcaaactcagggaaagcggtacccgcatgggcgctg
gagacctgcaccaatgaattggaatggagcccgccttatgcgtacagcgcagggaaatcc
ctcgccgtcgttgagaaatatgttctggaaaatgccggtgcgggaaaactggagattgcc
ctgccgtag
DBGET
integrated database retrieval system
