Pectobacterium carotovorum subsp. carotovorum PC1: PC1_3080
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Entry
PC1_3080 CDS
T00934
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pct03009
]
PC1_3080
Enzymes [BR:
pct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC1_3080
Ribosome biogenesis [BR:
pct03009
]
Prokaryotic type
rRNA helicases
PC1_3080
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACT14103
UniProt:
C6DC09
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All DBs
Position
3487815..3489140
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AA seq
441 aa
AA seq
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MTVTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIKDFAERLLNDPVEIESDPSRRERKKILQWYYRADDVKHKTALLC
HQLKQPDVTRSIIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVN
VLVATDIAARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRVIDELRPTTKAPSAKTTGKPSKKVLAMRKEKKEKEKEKVKVKVRHR
DSKNIGKRRQPTQKTDEPSGE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgagctcgatcttgatgaaagcctgttagacgccctgcgt
gacatgggctacgaacgcccgaccgcgattcaggctgaggcgatccctccagcaatggaa
ggccgcgatgtactgggttccgcgccgacagggacaggtaaaactgcggcttatctgctg
ccggttttgcagcatctcatcgattttcctcgtaaaaaatccggtccacctcgtattctg
atcctcacaccaactcgtgagctcgccatgcaggtggccgatcaggcacgtgcgtttgcg
gcacacacgcaccttgatgtcgccacgatcaccggcggcgtggcctacatgaaccacgct
gaagtgttcagtgaaaaccaggatgtcgtcgtcgcgacgaccggccgtttgctgcaatat
atcaaagaagaaaacttcgattgccgcgcagtagaaacgctgattctggatgaagcggac
agaatgctggatatgggcttcgctcaggatattgaacacatcgccggggaaactcgctgg
cgtaagcaaacgctgctgttttctgcgacgctggaaggggacgcgatcaaagatttcgcc
gagcgtttgctcaacgatcctgttgaaatcgaatccgatccatcacgtcgggaacgtaaa
aaaattctgcagtggtattaccgcgccgacgacgtcaaacacaaaaccgccttgctctgc
catcagttaaagcagccggacgtcacgcgttctatcatctttgtgcgcaagcgtgagcgc
gtacatgagctggttgcctggctgcgtgaagcgggcattaactcatgctatctcgaaggt
gaaatggtgcaggccaagcgcaatgaggcgatcaaacgcctgagcgacgggcgcgtcaac
gtgctggtagcaacagatatcgcagcgcgcggtattgatattaacgatgtcagccacgta
tttaacttcgatttgccgcgcacatcggacacttaccttcatcgcatcggccgcactggc
cgcgcgggtcgtaaaggctgtgccatctctttcgtcgaagcgcacgatcacctgctgctg
ggcaaaatcagccgctatctgaatgaaccgctaaaaccgcgcgtcattgatgaactccgc
ccaacgaccaaagccccaagcgccaagaccaccgggaaaccgtcgaaaaaagtgctggcg
atgcggaaagagaaaaaagagaaggaaaaagaaaaagttaaggtgaaagttcgtcatcgc
gatagcaaaaatatcggtaagcgtcgtcaacccacgcagaaaaccgacgaaccgtctggc
gaataa
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