Pectobacterium carotovorum subsp. carotovorum PC1: PC1_3859
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Entry
PC1_3859 CDS
T00934
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct00040
Pentose and glucuronate interconversions
pct01100
Metabolic pathways
pct02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PC1_3859
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PC1_3859
Enzymes [BR:
pct01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PC1_3859
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ACT14874
UniProt:
C6DGB1
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Position
4341250..4342374
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AA seq
374 aa
AA seq
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MKYLLPTAAAGLLLFAAQPAMAANTGGYATTDGGEVSGAVKKTARSMQEIVDIIEAAKVD
SKGKKVKGGAYPLIITYNGNEDSLIKAAEKNICGQWSKDARGVQVKEFTKGITIQGTNGS
SANFGIWIINSSDVVVRNMRFGYMPGGAQDGDAIRIDNSPNVWIDHNEIFAKNFECKGTP
DNDTTFESAVDIKKGSTNVTVSYNYIHGIKKVGLSGSSNTDTGRNLTYHHNIYRDVNSRL
PLQRGGLVHAYNNLYDGITGSGFNVRQKGIALIESNWFENALNPVTARNDSSNFGTWELR
NNNITKPADFSKYNITWGRPSSPHVNADDWKSTGKFPSISYKYTPVSAQCVKDKLANYAG
VGKNLAVLTAANCK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatctattgcctacggcagccgccggattgttacttttcgctgctcagccagcc
atggccgccaatacgggcggttatgccactacggatggcggagaagtttccggtgccgtg
aaaaagaccgcgcgctccatgcaagaaattgtggatatcattgaagccgcaaaagtggat
tcaaaaggcaaaaaagtcaaaggcggtgcgtacccgctgatcatcacctataacggtaat
gaagactcgctaattaaagcggccgaaaaaaatatctgcggtcagtggagtaaggacgca
cgcggcgtacaagtcaaagagtttaccaaagggatcaccatccagggcaccaatggctca
tccgccaacttcggtatctggattatcaattcatctgacgttgttgttcgtaatatgcgc
tttggctatatgccgggcggcgcgcaagacggcgatgccattcgtattgataactcgccg
aacgtctggattgaccacaatgagatctttgccaaaaactttgagtgtaaaggcacacca
gacaatgacaccacttttgaatcggccgtcgatatcaagaaagggtcaactaacgtcacc
gtgtcatacaactacatccatggcattaaaaaagtgggcttgagcggttcaagcaatacg
gataccggtcgtaacctgacttatcatcacaatatctatcgcgatgttaactcacgtctg
ccgctacagcgtggtggtctggttcatgcgtacaacaacctgtatgacggtatcaccggt
tcaggctttaacgtccgtcagaaagggatcgcgctgatcgaaagcaactggtttgaaaat
gcgttgaacccagtaacggcacgtaacgacagttccaacttcggtacctgggagttgcgt
aataacaacatcaccaaaccggcagacttctccaaatacaacattacctggggccgccct
tcctctcctcacgtcaatgcggatgactggaaaagcaccggcaagttcccttccatttct
tataaatacaccccagtttctgcacagtgcgtgaaagataaactggcaaactatgctggc
gtaggtaaaaacctggcagtcctgacagcagctaactgtaaataa
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